Shewanella rhizosphaerae: K0I63_19140
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Entry
K0I63_19140 CDS
T09262
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
srhs
Shewanella rhizosphaerae
Pathway
srhs00540
Lipopolysaccharide biosynthesis
srhs01100
Metabolic pathways
srhs01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
K0I63_19140 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
srhs01005
]
K0I63_19140 (rfaD)
Enzymes [BR:
srhs01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
K0I63_19140 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
srhs01005
]
Core region
K0I63_19140 (rfaD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
Motif
Other DBs
NCBI-ProteinID:
QYK12810
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Position
4402061..4403014
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AA seq
317 aa
AA seq
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MIIVTGAAGFIGSNLVKALNNLGRSDIIAVDDLTDGTKMFNLADCEIADYLDKADFIEQI
AQGQFDDKIEVIFHQGACSSTTEWDGKFMMANNYEYSKTLLHFCERNGSQFIYASSASVY
GGSDKFIEQRELEKPLNVYAYSKFLFDQYVRQHNFTTQVAGLRYFNVYGPREQHKGGMAS
VAFHFNNQIKASGICRLFQGHDGFEDGKQLRDFVYVEDVVKVNLWLWQNPGISGVYNCGT
GQAQSFNDVANAVIAYHGKGEIEYIPFPDKLKGAYQSYTQADLTQLRAAGYTQAFKTVEE
GVPEYLDWLAAQHFIGQ
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgatcatagtaacgggtgctgccggctttatcggtagcaacttagttaaagcgctcaat
aatttagggcgtagtgacattatcgccgtagacgacctgaccgacggcaccaagatgttt
aacctggccgactgtgaaattgccgactatctggataaagccgacttcatcgagcagatc
gcccagggacagttcgatgacaagatcgaagtgatcttccatcagggtgcctgctcgtcg
accactgagtgggatggcaagttcatgatggccaacaactacgagtattccaagacactg
ctccacttctgcgagcgtaacggcagccagtttatctacgcctcatcggcttctgtctat
ggcggcagcgataagtttatcgagcagcgggaactggagaagccactcaacgtctacgcc
tactctaagttcctgttcgaccaatatgtcagacagcacaacttcaccactcaggtggcg
ggcctacgttacttcaacgtctatgggcctagggagcaacacaagggcggcatggccagc
gtagccttccacttcaacaaccagatcaaggcgagcggcatctgtcgcctgttccaaggc
cacgacggcttcgaagatggcaagcagctaagagacttcgtctacgtggaagatgtggtc
aaggtcaacctctggctttggcaaaacccagggatctcaggagtatacaactgtggtacg
ggtcaggcacagagcttcaacgacgtggccaatgcggtgatcgcctatcatggtaaggga
gaaattgaatatattcccttcccggataagctcaagggcgcctatcagagctatacccag
gccgacctgacgcagctaagagccgccggatatacccaggcatttaagacggtcgaagag
ggggttcccgaatatctggactggctggccgcgcagcactttatcggtcagtag
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