Serratia sp. AS12: SerAS12_4253
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Entry
SerAS12_4253 CDS
T01502
Name
(GenBank) Ornithine decarboxylase
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
srs
Serratia sp. AS12
Pathway
srs00330
Arginine and proline metabolism
srs00480
Glutathione metabolism
srs01100
Metabolic pathways
srs01110
Biosynthesis of secondary metabolites
srs04148
Efferocytosis
Module
srs_M00134
Polyamine biosynthesis, arginine => ornithine => putrescine
Brite
KEGG Orthology (KO) [BR:
srs00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
SerAS12_4253
09106 Metabolism of other amino acids
00480 Glutathione metabolism
SerAS12_4253
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
SerAS12_4253
Enzymes [BR:
srs01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
SerAS12_4253
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Gene cluster
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
AEF52301
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All DBs
Position
complement(4549336..4551498)
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AA seq
720 aa
AA seq
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MKELKIATSASLVATIETLRQIVRIEQTDYTDVAAVVVSVDDVNAGILAQLKATGFEIPT
FVAVEGDEHLSPDYLPFITGVFALAGASKAFYMAQLEAAADAYEQALLPPFFKTLKTYVE
MENSTFACPGHQGGEFFRKHPAGRKFFEFYGETLFRSDMCNADVKLGDLLIHEGSAKDAQ
KHAARVFNADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPV
YLETARNPFGFIGGIDSRCFDERYLREQIREVAPEKANAARPFRLAIIQLGTYDGTIYNA
RQVIDTIGHLCDYILFDSAWVGYEGFIPMLKECSPLLLELDELDPGIFVTQSVHKQQAGF
SQTSQIHKKDDHIKGQKRHCNHKHLNNAFMLHASTSPFYPLFAALDVNAKMHAGAAGRRM
WMDCVKLGIETRKQLLERCSQLRPFIPLQVAGKDWQDYDTDLIANDARFFNFVPGETWHG
FEGYAQDQYLVDPCKLLLTTPGIDAATGQYTEFGVPATILANFLRENGIVPEKCDLNSIL
FLLTPAENPAKMEHLVDMLVRFERYVEEDAPLSEVLPTVYRKNEQRYRGYTLRQLCQEMH
DLYVSFDVKQLQKEMFRQNHFPQVVMNPQDANVEFIRDNVELVPIGQAEGRIAAEGALPY
PPGVLCVVPGEVWGGAVQRYFLALEDGINRLPGFSPELQGVYIEKKDHGWKRIFGYMIKQ
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattgaaaatagcaacaagcgccagcctggtcgccacgattgaaacgctgcgc
cagattgtccgcattgaacagacggactataccgatgtggccgcggtggtcgtgtcggtt
gatgacgttaacgccggtattttggcgcagctgaaagccaccggattcgagatcccaacg
tttgttgctgttgaaggggatgaacatctctccccggactacctgccgtttattaccggc
gtttttgccctggccggcgccagcaaggcgttctatatggcgcagctggaagccgctgcg
gacgcctacgagcaggcgctgctgccgccgtttttcaaaacgctgaagacttacgtggag
atggaaaactccaccttcgcctgcccggggcatcagggcggggagtttttccgcaagcac
ccggccggccggaagtttttcgaattctacggtgaaacgcttttccgttccgacatgtgc
aacgccgacgtcaagttgggcgacctgctgatccacgaaggctcggccaaggatgcgcaa
aagcatgcggcgcgggtcttcaacgccgataaaacctatttcgtgctcaacggcacttcg
gcggccaacaaggtggtgaccaatgcgctgctgacccgcggcgatctggtgctgttcgat
cgcaacaaccataaatccaaccaccacggcgcgctgatccaggccggggcgacgccggtg
tatctggaaaccgcgcgcaatccgtttggttttatcggcggcatcgattcacgttgcttt
gacgagcgctatctgcgtgagcaaattcgtgaggtggcgccggagaaggccaatgcggcg
cggccgttccgcctggcgatcattcagctcggtacttacgatggcactatctataatgcg
cgccaggtgatcgacaccatcggccatctgtgcgattacatcctgtttgactccgcctgg
gtgggttacgaaggctttatcccgatgctgaaagagtgctcgccgctgttgctggagctg
gatgaactcgatccgggtattttcgttacccagtcggtgcataagcagcaggcaggtttc
tcgcagacctcacagatccacaagaaagacgatcatatcaagggccagaagcgccactgt
aaccacaagcaccttaataacgctttcatgttgcatgcctcgaccagcccgttctacccg
ctgttcgctgcgcttgacgttaacgccaagatgcatgccggggccgccggccgtcgcatg
tggatggactgcgtaaagctcggtatcgagacgcgcaagcaactgctggaacgctgttcc
cagctccggccgtttattccgttgcaggtagcgggcaaggactggcaggattacgatact
gacctgatcgccaacgacgcccgtttcttcaattttgtgccgggcgagacgtggcacggt
ttcgaaggttatgcgcaggaccagtatctggtcgatccgtgcaagctgctgctgaccacg
ccgggcatcgacgcggccaccggccaatacaccgagttcggcgtgccggccaccattctg
gccaacttcctgcgtgagaacggcatagtgccggagaaatgcgatcttaattcgatcctg
ttcctgctgaccccggcggaaaatccggccaagatggagcacctggtcgatatgctggtg
cggttcgaacgctacgtggaagaagacgcgccgctgagcgaagtgttgccgacggtgtac
cgcaagaacgagcagcgctaccgcggctataccctccgccagctgtgtcaggaaatgcac
gatctgtacgtcagcttcgacgttaagcagctgcaaaaagagatgttccgccagaaccat
ttcccgcaggtggtgatgaacccgcaggacgccaacgtggagtttattcgcgacaacgtc
gagctggtgccgatcggccaggctgaagggcgcattgcggcggaaggcgcgttgccgtac
ccgccgggcgtgctgtgcgtggtgccgggggaagtgtggggcggagcggtgcagcgttac
ttcctggcgctggaagacggcatcaaccgtctgccaggcttctcgccggagctgcagggc
gtgtatatcgagaaaaaagatcacggctggaaacgcattttcggctatatgatcaagcag
taa
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