Serratia sp. AS12: SerAS12_4838
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Entry
SerAS12_4838 CDS
T01502
Name
(GenBank) diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
srs
Serratia sp. AS12
Pathway
srs02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
srs00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SerAS12_4838
Enzymes [BR:
srs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
SerAS12_4838
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_10
GGDEF_2
RIP
Motif
Other DBs
NCBI-ProteinID:
AEF52882
LinkDB
All DBs
Position
5227149..5229143
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AA seq
664 aa
AA seq
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MFTDQGPILLNAHFGTSSPYWRLAFDSNALELSAVKGKAHMAVALSAIQAAKIRRLSGIT
ASLDISISLVGEPIHLHLVGRRINKLEWAGTASAFSDTKSVARDLVHGLSFAEQVVSEAN
SVIVIVDQHGRIQRFNRLSEEYTGLHEHDVIGKNVFQLFMSPEEAAASRRNIAGFFRNGS
SYEVERWVKTVKGERLFLFRNKFVHSGSGKNEVFLICSGTDITEERRAQERLRVLANTDI
ITGLPNRNAIQDKIIQAIATRGDSNVGLVYLDLDNFKKVNDAYGHMFGDRLLVEVSLAVL
GCLEPDQVLARLGGDEFLVLAQQADREVLQQLAQRIIDRLKTPFRIGLIEVYTGCSIGIA
LCPEHGNDLDGLIRSADTAMYVAKERGKRTFTVFSPEMNKRVAEYMWLDTNLRKGLEQNQ
LVVYYQPKIDALSGMVHSVEALVRWDSPERGLIPPLQFISYAEESGLIGPLGRWVLQTAA
KQAAQWQQQGLALRVAVNLSARQLVDDSIVEDLIDVLQHNQLTPCLLDFELTESSLIEDE
RRARAVITRLRELGAQVHLDDFGTGYSSLAQLARIPLDAIKLDKSFVRGVNFNPVSQSLV
RAIVAAAEALKFRVIAEGVETESENRFLDEVGVDEKQGFLFARPMLPEQLEHWLRSYCPS
PPSA
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgttcacagaccaaggtcctatactcctgaacgcccactttggcaccagcagcccctac
tggcgactggcattcgacagcaatgccctggagctgtccgctgtcaaaggcaaagcccat
atggccgtggcgctcagcgccatacaggcggcaaaaatacggcgtctgagcggcattacc
gccagcctggatatctctatttcactggtcggcgagccgatacatttgcatctggtgggc
cgccggatcaacaaactggaatgggccggcaccgcctccgctttcagtgacaccaagtcg
gtcgcccgtgatctggtacatgggctttcctttgcagagcaggtggtatcggaagccaat
tcggtgattgtgattgtcgatcagcatggccgcattcaacgtttcaaccgtctgagcgaa
gaatacaccggtctgcatgaacatgatgtcattggcaaaaacgtctttcagctgtttatg
agcccggaagaagcggcggcctcgcggcgaaatatcgccggttttttccgtaatggttcg
tcctacgaggtggaacgctgggtcaaaacagtaaaaggcgagcggctgtttttgttccgc
aataaattcgtccacagcggtagcgggaaaaacgaagtctttctgatttgctccggtacg
gacatcaccgaagaacgccgcgcccaggaacgcctgcgggtgctggccaataccgatatc
atcaccggcctgcccaaccgcaacgccattcaggacaaaatcatccaggcgatcgcgaca
cgcggtgacagcaacgttgggctggtgtacctcgatctcgataatttcaaaaaggtgaac
gacgcctacgggcatatgttcggcgaccgcttgctggttgaggtatcgctggcggtgctc
ggctgcctggagcccgatcaggttctggcccgtcttgggggcgatgagttcctggtgctg
gcccaacaggccgaccgcgaggtgctgcaacagctggcccagcgtattatcgaccggttg
aaaacgcccttccgcatcggccttatcgaagtctataccggttgttcgattggcatcgcg
ctgtgcccggaacacggtaacgatctcgacggcctgatccgcagcgccgacaccgccatg
tacgtcgccaaagagcgcggcaaacgtacctttaccgtgttctcgccggaaatgaacaaa
cgcgtcgctgaatatatgtggctggacaccaacctgcgcaagggtctggagcaaaatcaa
ctggtggtttattaccaaccgaaaatcgatgcgctcagcggcatggtgcacagcgtggaa
gccctggtgcgttgggactcgcccgaacgcggtctgatcccgccgttacagtttatctct
tacgctgaagaatccgggctgatcggcccgctcggtcgatgggtgctgcagactgcggcc
aaacaggccgcccagtggcagcagcaagggctggcgctgcgggtcgccgtaaatctttcc
gcacggcagctggtcgatgattccatcgtggaagatcttatcgacgtgttgcagcacaac
cagttgacgccgtgcctgctggacttcgaattgacggaaagcagcctgattgaggatgag
agacgcgcacgcgcggtcatcacccggctgcgtgaactgggcgcgcaagttcatcttgac
gattttggcaccggttactcctcgctggcgcagctggcgcgtatcccgctggatgccatt
aagttggataaaagctttgtgcgcggcgtgaatttcaatccggtttcacaatcgctggtg
cgcgccatcgtcgcggcggccgaggcgctgaaattccgggtgatcgccgaaggcgttgag
acagaaagcgagaacaggttcctggatgaggttggcgtggacgagaaacaggggttcctg
tttgcgcggccaatgctcccggaacagctggaacattggctgcggtcttattgcccgtca
ccgccctcggcgtaa
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