Serratia plymuthica S13: M621_01080
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Entry
M621_01080 CDS
T02716
Symbol
fadB
Name
(GenBank) multifunctional fatty acid oxidation complex subunit alpha
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
sry
Serratia plymuthica S13
Pathway
sry00071
Fatty acid degradation
sry00280
Valine, leucine and isoleucine degradation
sry00310
Lysine degradation
sry00362
Benzoate degradation
sry00380
Tryptophan metabolism
sry00410
beta-Alanine metabolism
sry00640
Propanoate metabolism
sry00650
Butanoate metabolism
sry00907
Pinene, camphor and geraniol degradation
sry00930
Caprolactam degradation
sry01100
Metabolic pathways
sry01110
Biosynthesis of secondary metabolites
sry01120
Microbial metabolism in diverse environments
sry01200
Carbon metabolism
sry01212
Fatty acid metabolism
Module
sry_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
M621_01080 (fadB)
00650 Butanoate metabolism
M621_01080 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
M621_01080 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
M621_01080 (fadB)
00310 Lysine degradation
M621_01080 (fadB)
00380 Tryptophan metabolism
M621_01080 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
M621_01080 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
M621_01080 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
M621_01080 (fadB)
00930 Caprolactam degradation
M621_01080 (fadB)
Enzymes [BR:
sry01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
M621_01080 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
M621_01080 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
M621_01080 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
M621_01080 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
Motif
Other DBs
NCBI-ProteinID:
AGP42622
UniProt:
S4YAT2
LinkDB
All DBs
Position
complement(240298..242487)
Genome browser
AA seq
729 aa
AA seq
DB search
MLYQGETLQLHWLDNGIAELVFNAPGSINKLDTRTVASLGEALDVLEKQTGLKGLLVRSS
KAAFIVGADITEFLSLFAAPAEKLHQWLAFANATFNRLEDLPVPTISAINGYALGGGCEC
ILATDFRVASPDARIGLPETKLGIMPGFGGSVRLPRLLGNDSALEIIAAGKDVSAKDALK
VGLVDAVVAPEKLVEAALKMLQQAIDGHLDWRAYRQPKLDPLKLSPIEAAMSFTTAKGMV
LQTAGKHYPAPMTAVKTIEAAAKLGRDEALKLETASFVPLARSNEARALVGIFLNDQFVK
SQAKKLAKNADAPKQAAVLGAGIMGGGIAYQSALKGVPVIMKDISDKSLALGMNEAAKLL
NKQLERGKLDGMKMAQVLSTIQPTLDYAGIERAQVIVEAVVENPKIKAAVLSEVEGLIGE
DTVLASNTSTIPINHLAKSLKRPQNFCGMHFFNPVHRMPLVEIIRGEQTSDNTIAAVVAY
ATRMGKTPIVVNDCPGFFVNRVLFPYFAGFSMLLRDGVDFRQIDKVMEKQFGWPMGPAYL
LDVVGIDTAHHAQAVMAAGFPERMGKDYRDAIDVMFDNQRFGQKNQLGFYRYSQDNKGKP
RKDNDEQTDALLAAVSQPRQAISDEEVIARMMIPMINEVVRCLEENIIASPAEADMALVY
GIGFPPFHGGAFRYLDTLGTANYVELAQRYAHLGALYQVPAGLRAKAERNESYYPVATPL
SDIATGQPA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgctctaccaaggcgaaacattacaactgcactggctcgataacggcatcgccgagttg
gtgttcaatgccccaggctcgataaacaagctggatacccgcaccgttgccagcctgggc
gaagcgctcgacgtactggaaaaacagaccgggctgaaagggctgctggtgcgttccagc
aaggccgcatttattgtcggtgccgatatcaccgaattcctttcactgttcgcggctccg
gctgaaaaactgcaccaatggctggccttcgccaacgcgacctttaaccgactggaagat
ctgccggtaccgaccatttcggccattaacggctatgcgctcggtggcggctgcgaatgc
attctggccaccgacttccgggtcgcttctcccgatgctcgcattggcctgccggaaacc
aagctgggcattatgccgggcttcggcggttccgttcgcttaccacgcctgttgggtaac
gacagcgcgctggagattatcgccgccggtaaagacgtcagcgccaaagacgcgctgaag
gtcggtctggtggatgcggtggtcgcaccggagaaattggtagaagccgcgctgaaaatg
ctgcaacaggctattgacggtcacttggactggcgtgcctatcgtcaaccgaaactcgat
ccgttgaaactcagcccaatcgaagcggccatgagcttcaccaccgccaaaggcatggtg
ctgcaaaccgcaggcaaacattatccagcgccgatgaccgcggttaaaaccatcgaagcc
gccgccaaattgggccgcgatgaagccttgaaattggaaaccgccagctttgtgcctttg
gcgcgttccaacgaagcgcgcgcactggtcggtatcttcctcaacgatcagtttgtgaaa
agccaggcgaaaaagctggccaaaaacgcggatgcgccgaagcaggctgcggtattgggc
gcaggcattatgggcggcggcatcgcttaccagtcagcgctgaaaggcgtgccggtgata
atgaaagacatcagcgacaaatccctggcgctcggcatgaacgaagccgccaaactgctg
aacaaacagctggagcgcggcaagctggacggcatgaagatggcgcaggtgctgtcgacc
attcagccgacgctggattatgccggtatcgaacgcgcgcaggtgatcgttgaagccgtg
gtcgagaatccgaagatcaaagcggcagtgttgtccgaggtggaaggtctgatcggtgaa
gacacagtgctggcatccaatacctcgaccattccgattaatcacctggcaaaatcactg
aaacgcccgcaaaacttctgtggcatgcacttctttaacccggtgcaccgcatgccgctg
gtggaaatcatccgcggcgagcagaccagcgacaacaccatcgccgccgtagtggcctac
gccacccgcatgggcaaaacgccgatcgtggtcaacgactgtccggggttcttcgtcaac
cgcgtactgttcccctattttgccggcttcagcatgctgttgcgcgatggggtggatttc
cgccaaatcgataaggtaatggaaaaacagtttggctggccaatgggcccggcttacctg
ctcgacgtggtggggatcgataccgcgcaccatgcccaggcggtaatggcggccggtttc
cctgagcgtatgggcaaagattatcgcgacgccattgacgtgatgttcgacaaccaacgt
tttggtcagaaaaaccagttgggtttctaccgttacagtcaggacaacaaaggcaagccg
cgtaaagataacgatgagcagaccgatgcgctgttggccgccgtctcccagccacgccag
gccatcagcgatgaagaagtcatcgctcgaatgatgatcccgatgatcaacgaagtggtg
cgctgcctggaagaaaacatcatcgccagcccggctgaagccgatatggcgttggtttac
ggcatcgggttccctccgttccacggtggggcgttccgttacctggatacgcttggcacc
gcaaactatgtcgaactggcccagcgttacgcgcatcttggcgctctgtatcaagtgcct
gccggcctgcgcgccaaagctgaacgcaatgaaagctactacccggtggcgacgccattg
tccgatatcgccactggccaaccggcatga
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