KEGG   Serratia plymuthica S13: M621_04990
Entry
M621_04990        CDS       T02716                                 
Symbol
ribD
Name
(GenBank) diaminohydroxyphosphoribosylaminopyrimidine deaminase
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
sry  Serratia plymuthica S13
Pathway
sry00740  Riboflavin metabolism
sry01100  Metabolic pathways
sry01110  Biosynthesis of secondary metabolites
sry01240  Biosynthesis of cofactors
sry02024  Quorum sensing
Module
sry_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:sry00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    M621_04990 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    M621_04990 (ribD)
Enzymes [BR:sry01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     M621_04990 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     M621_04990 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Inv-AAD
Other DBs
NCBI-ProteinID: AGP43262
UniProt: S4YCU8
LinkDB
Position
1065578..1066687
AA seq 369 aa
MHNDEFYMARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMA
GERARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAG
IDVRHGLMLSDAEAVNPGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQD
VQRLRAQSAAILSTSATVLADDPSLTVRWDELDTATQSLYPRENLRQPLRIILDSQNRVT
PQHRVVQQPGTTWLARLQPDDQNWPQEVEQLTFPTHGGGVDLVVMMMQLAKRQVNSIWVE
AGAALSGALLQAGLVDELILYIAPKLMGDNGRGLCRLPGLENLADAPEFVFSEVRQIGPD
LRLRLKPKY
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgcataacgacgaattttatatggcacgtgcctttgagttggcgcggctggggcgtttc
actaccgcaccgaacccgaacgtcggctgcgttatcgtgcgtgacggcgaaatcgtcggc
gaaggttatcacctgcgcgccggcgaacctcatgcggaagtgcatgcgttgcgcatggcg
ggcgagcgggcgcgcggcgccaccgcttatgtcacgctggagccctgcagccatcacggg
cgcacgccgccttgcgctgatgcgctggtcgccgccggcgttgcccgcgtggttgcggcg
atgcaggatcccaacccggaggttgccggtcgtggcctgtacaagctgcaacaggcgggt
atagacgtgcgccacggcctgatgctgagcgatgcggaagcggtgaatccgggttttctc
aaacgcatgcgcaccggttttccttatgtgcaactgaagctgggggcctcgctcgatggc
cgcacggccatggcttccggcgagagccagtggatcacctcaccgcaggcgcggcaggac
gtgcagcgtttgagagcgcaaagcgccgccatcctgagcaccagcgccaccgtgttggcc
gacgatccgtcgctgacggtgcgttgggatgagctggataccgccactcagagcctctac
ccacgtgaaaatctgcgccagccgctgcgcattatcctcgacagccagaaccgcgtaacg
ccgcagcatcgggtagtgcagcagccgggaacgacctggctggcgcggttgcagccggac
gatcagaactggccgcaggaggttgaacaactgacatttccgacgcacggcggcggggtg
gatctggttgtgatgatgatgcaactggcgaagcgccaggtgaattccatctgggtagaa
gccggcgctgcgctttccggcgcgttgttgcaggcagggctggttgatgagctcattttg
tacatcgcgccaaaactgatgggtgataatgggcgcggcctgtgccggttgccgggcctt
gaaaacctggccgatgcgccggaattcgtcttcagcgaagtacggcaaatcggccccgac
ctgcgcttgcggctgaagccgaaatactga

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