Serratia rubidaea: AXX16_4106
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Entry
AXX16_4106 CDS
T04417
Name
(GenBank) tRNA S(4)U 4-thiouridine synthase (former ThiI)
KO
K03151
tRNA uracil 4-sulfurtransferase [EC:
2.8.1.4
]
Organism
srz
Serratia rubidaea
Pathway
srz00730
Thiamine metabolism
srz01100
Metabolic pathways
srz01240
Biosynthesis of cofactors
srz04122
Sulfur relay system
Module
srz_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
AXX16_4106
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
AXX16_4106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srz03016
]
AXX16_4106
Enzymes [BR:
srz01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.4 tRNA uracil 4-sulfurtransferase
AXX16_4106
Transfer RNA biogenesis [BR:
srz03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
AXX16_4106
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ThiI
THUMP
Rhodanese
QueC
Diphthami_syn_2
tRNA_Me_trans
Motif
Other DBs
NCBI-ProteinID:
AML59788
LinkDB
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Position
complement(4408538..4409986)
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AA seq
482 aa
AA seq
DB search
MKFIIKLFPEITIKSQSVRLRFIKILTTNIRNVLKQYDENLAVVRHWDFIEVRAKDENQR
PAIADALARIPGIHHILEVEDRAYTDIHHIFEQTLEAYRERLEGKTFCVRVKRRGKQEFS
SQDVERYVGGGLNQHIESARVKLNHPQVTVNLEIEDDKLMMVKARREGIGGYPIGTQEDV
MSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVKQVAHYLWNRFGSSHKVRFV
AIDFEPVVGEILEKVDDGQMGVVLKRMMVRAASKVAERYGVQALVTGEALGQVSSQTLTN
LRLIDNASDTLILRPLISHDKEHIINVARQIGTEDFAKTMPEYCGVISKSPTVKAVKAKI
EEEEGNFDFEILERVVREARNVDIRTIASETQEQVTEVETVAAFNADQVILDIRSVDEQD
EKPLQLEQVEVKALPFYKLGTQFGDLDQSKTYLLYCERGVMSRLQALYLLEQGYTNIKVY
RP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttatcattaaattgttcccggaaatcaccatcaagagtcaatctgtgcgcttg
cgcttcataaagattcttaccaccaacattcgtaatgtcctgaagcagtatgatgaaaac
ctggcggtggtccggcactgggactttattgaagtccgcgccaaagacgaaaaccagcgg
ccggcgattgccgacgcgctggcgcgcattcccggcatccaccatattctggaagtggaa
gaccgcgcctacaccgatatccaccatatcttcgagcagacgctggaagcctatcgcgag
cggctggaaggcaagaccttctgcgtgcgtgtgaagcgccgcggcaagcaggaattcagt
tcgcaggacgtggaacgctacgtcggcggcggcctgaaccagcatatcgagagtgcgcgg
gtaaaactgaaccatccgcaggtgacggtcaatcttgagattgaagatgacaagctgatg
atggtgaaagcgcgtcgtgaaggcatcggcggctacccgatcggcactcaggaagacgtc
atgtcgctgatttccggcggttttgactccggcgtttccagctatatgctgatgcgtcgc
ggctgccgggtgcattactgcttcttcaacctgggcggcgccgcgcatgagatcggcgtt
aaacaggtggcgcattacctgtggaaccgcttcggcagctcgcacaaggtgcgcttcgtg
gcgatcgattttgagccggtggtgggcgaaattctggaaaaagtcgacgacggccaaatg
ggcgtggtgctcaagcgcatgatggtgcgcgccgcctccaaagtggcggagcgctacggc
gtacaggcgctggtgaccggcgaagcgctgggacaggtgtccagccagaccctgaccaac
ctgcgcctgatcgacaacgcctcagacaccctgatcctgcgtccgctgatctctcacgat
aaagagcacatcatcaacgtggcgcgccagatcggcaccgaagacttcgccaaaaccatg
ccggaatattgcggcgtgatttccaaaagcccgacggtaaaagcggtgaaggcgaagatc
gaggaagaagagggcaacttcgatttcgagatcctcgagcgggtggtgcgcgaagcgcgc
aacgtagatatccgcaccatcgccagtgaaacccaggagcaggtcacggaagtagaaacc
gtggcggcgtttaatgccgaccaggtgattctggatatccgctccgtagacgagcaggac
gaaaagccgctgcagctggagcaggtagaggtgaaagcgctgccgttctacaagctgggc
acccagttcggcgatctggatcagagcaaaacctacctgctgtactgcgagcgcggcgtg
atgagccgtctgcaggcgctgtatctgctggagcaggggtataccaatattaaagtgtac
cgtccctga
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