Sus scrofa (pig): 100512355
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Entry
100512355 CDS
T01009
Symbol
CDKAL1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssc03016
]
100512355 (CDKAL1)
Enzymes [BR:
ssc01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
100512355 (CDKAL1)
Transfer RNA biogenesis [BR:
ssc03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
100512355 (CDKAL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
100512355
NCBI-ProteinID:
XP_003128247
Ensembl:
ENSSSCG00000001080
UniProt:
F1RUG0
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All DBs
Position
7:15910645..16569643
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AA seq
578 aa
AA seq
DB search
MPSASCDTLLDDIEDIVSQEDSKPQDRHFARKQVVPKVRRRNTQKYLQDENSPPSDSTIP
GIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRN
SIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQ
KKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDR
AKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLVEVIPEGAMLRLGMTNPPYILEH
LEEMAKILNHPRVYAFLHIPVQSASDTVLMDMKREYCVADFKRVVDFLKDKVPGITIATD
IICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLS
RVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIYE
SGKHFMKGQPVSDAKVYTPSISKPLAKGEVSGLTEEFRNRLGNHLNSISHTSTGTQRNAA
SSRMALQLQRLHQDCALRLSVGLALLALLFAFLVKVYN
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgcatcctgtgatacactactggatgacatagaagatattgtgtcccaagaa
gattcaaagccacaggacaggcattttgcaagaaagcaagtcgttccaaaggtgcgaagg
cgaaatacccaaaaatacttgcaagacgaaaacagtccaccaagtgatagcactattcca
ggcattcagaaaatttggatacgaacatggggttgttctcataataattcagatggagag
tacatggctggacaactagctgcttatggatataaaattacagaaaacgcatctgatgca
gatttatggctcctgaatagttgtacagtaaaaaatccagctgaagaccacttccgaaac
tcaattaaaaaagctcaagaggagaataagaaaatagtgctagctggatgtgttcctcaa
gcccagcctcgtcaggactaccttaaaggactgagcatcataggggttcaacagatagat
cgagtggtagaagttgtggaggaaacaattaaaggtcactctgtgagacttctggggcaa
aaaaaggataatggaaaacggttggggggcgcacgattggatttgccaaagattaggaag
aatccactgatagaaatcatttctatcaatactgggtgcctcaacgcttgtacctactgc
aaaactaaacacgccagaggaaatttagccagttatccaattgatgaactagtagataga
gccaaacagtcttttcaagagggtgtatgtgagatatggttgaccagcgaagacacaggg
gcttatggcagagatatcggcaccagtctccccgcgctcctgtggaaactggtcgaagtg
attcctgagggagcaatgctgagacttggcatgacaaatccaccctacattttagagcat
ctggaggaaatggcaaaaatccttaaccatccccgagtctatgcttttctgcacataccc
gtccagtctgcctctgacactgtgctcatggatatgaaaagggagtactgcgtggctgac
ttcaaaagagtagtggattttctgaaagacaaagttcctggaataaccattgctacagat
attatctgtggttttcctggagaaacagaccaggattttcaagaaacagtgaaacttgtt
gaagaatacaaatttccaagcctctttattaaccagttttacccaagaccaggaactcct
gctgcaaaaatggaacaagttccagcacaagtgaaaaagcaaagaacaaaagatctttct
cgggtctttcattcctacaatccatatgatcataagattggtgaacggcaacaagtgtta
gtaacagaagaatcttttgattccaagttttacgttgcacacaatcgattctatgagcag
gttttagtgccaaagaaccccacattcatggggaaaatggtcgaagtggacatttatgaa
tcaggaaaacactttatgaaagggcagccagtatcagatgccaaagtatacacgccatcc
atcagcaaaccgttagcaaaaggagaagtctcaggtttaacagaggaattcagaaatagg
cttgggaatcacctgaattcaatatcccacacctcgactggaactcaacgaaatgccgca
agttccagaatggcactgcaactgcaaaggctacaccaagactgtgcactgagattgtcg
gtgggcctggctctgttggctcttctgtttgcttttttggtcaaggtctataattaa
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