Sus scrofa (pig): 100518066
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Entry
100518066 CDS
T01009
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100518066 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
100518066 (POLR1A)
Enzymes [BR:
ssc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100518066 (POLR1A)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100518066 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
NOA36
Motif
Other DBs
NCBI-GeneID:
100518066
NCBI-ProteinID:
XP_005662463
Ensembl:
ENSSSCG00000008226
UniProt:
A0A8D1IL37
LinkDB
All DBs
Position
3:58670377..58750441
Genome browser
AA seq
1720 aa
AA seq
DB search
MLGSKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPPDS
KEVCSTCVQDFNNCPGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
LCQLRVLEVGALQAVYELERILYRFLEENPDPTASEIQEELEQYTATIVQNNLLGSHGSH
VKNVCESRSKLIASFWKAHMTAKRCPHCRTGRSVVRKEHNSKLTITYPAMVHRKADQKDA
EPQAPGIEEAQMGKRGYLTPLSAQDHLIALWKNEGFFLNYLFLGLEDVGLESRFNPSMFF
LDFLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPCEVAAP
APDEEKDSSTAMDRSFLSLLPGQSLTDRLYNIWIRLQSHVNIVFDSEMDKLTMEKYPGIR
QILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQ
ELRQAVINGPTVHPGASMVINEDGSRTALSASDLTQREAVAKQLLTPATGAPKPQGTKIV
CRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHF
PQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVY
RGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDQIPLNLLGKAKIGGKAWVK
EAPRPVPGFNPNLMCESQVVIRDGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVL
TCLARLFTAYLQLYRGFTLGVEDILVKPRADVRRHRIIEESTRCGPRAVRAALNLPEAAS
CDEVRGKWQDAHLSKDQRDFNMIDLKFKEEVNHHSNEINKACMPLGLHRQFPENNLQMMV
QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG
IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL
YGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLREVLSKAEPKKALRHFRAIKKWQSR
HSNSLLREGAFLNYSQKIQAAVKALNLEGANQNGRSPETHQVLRMWSELDEQSRRKYQKK
AAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSLEWAAQAEKSHEKSELSLERLRTLLQL
KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN
IKTPMMSVPVFNTRRALKKVKSLKKQLTRVCLGEVLEKIDVQESFSMGEKQAKFRVYQLR
FQFLPYACYQQEKCLRPEDILHFMETRFFKILMESIKKKNNKASTFRNVNTRRATQRDLD
DSGESERTRGDREGDDEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEDEEKEED
EKEDEDIQEEGSIRGEGFHQEQEEEEGLGPEEDSLPAAPLTQPRKPTRSREPQGAEAVER
RVRAVRECHPLIEDYQYDTEASLWCQVTVKLPLMKVNFDMSSLVVSLAQGTVVYATKGIT
RCLLNETTNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRV
IEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQF
LKQATMMGSHDELRSPSACLVVGKVVRGGTGLFELKQPLR
NT seq
5163 nt
NT seq
+upstream
nt +downstream
nt
atgttgggctcaaagaacatgccctggcggcggctgcagggcatttccttcgggatgtat
tcagccgaagagctcaagaagttaagcgtcaagtccatcacgaaccctcggtatctggat
agcctggggaacccttcggcaaatggcctgtatgacttagccctgggccctccggattcc
aaagaggtgtgctccacctgtgtgcaggacttcaacaactgccccgggcacctgggccac
atcgaactcccgctcactgtgtacaatcctctgctctttgataaactttacctgctgctc
cggggatcctgtttaaactgtcacatgctgacttgtccccgggctgtgattcacctccta
ctctgccagctgagagttctggaagtcggggccctgcaagcagtgtacgagctcgagaga
attctatacaggtttctggaagaaaatcctgatcctacggcctctgaaattcaggaggag
ttagagcagtatacagccacaatcgtacagaacaacctcttgggatcccatggctcacat
gtgaaaaacgtctgcgagagcaggagcaagctcattgcttctttctggaaggcgcacatg
actgccaagcgatgcccccactgcagaaccgggcggtcagttgtccgcaaggagcacaac
agcaaactgacgatcacgtacccagccatggtacacaggaaggctgaccagaaggacgcc
gagcctcaggctccaggaatcgaggaagctcagatgggaaaacgaggatacttgacgccc
ttgagtgcccaagatcatctcattgccctctggaagaacgaagggttctttctgaattac
ctctttttgggactggaagatgttggcctggaatccaggttcaatcccagtatgttcttt
ctggatttcttggtggtgcccccctcaaggtatcggcccgtcaaccgcctaggggaccag
atgtttaccaacggccagacggtgaacctgcaggctgtcatgaaggacgtggttctgatc
cgaaagcttctggcgttgatggctcaagaacaggagctgccgtgtgaggtggcggcacca
gctccagatgaggaaaaagactcttcgactgctatggaccgatcctttttgagtctgctt
ccaggccagtccctcacagacagactttacaacatttggattcgccttcagagccacgtc
aatattgtgtttgacagcgagatggacaaattaacaatggaaaagtaccctggcattaga
cagatcttggagaagaaggatggcttattccgaaagcacatgatgggaaagcgagtagac
tacgcagcccgctcggtcatctgcccagacatgtatatcaacaccaacgaaattggaatt
cccatggtgtttgccacaaagctgacctaccctcagccggtcaccccctggaacgttcag
gaactgaggcaggcagtcatcaacgggcccaccgtgcacccaggggcctccatggtcatc
aacgaagacggcagccgcacagccctgagtgcctcggacctcacccagcgggaagccgtg
gccaaacagctcctgacgcccgccacgggggcacccaagccccaggggacaaaaattgtg
tgccggcatgtgaaaaatggagacattctcctcctgaaccgacagcccaccctgcaccgg
ccctccatccaggcgcatcgtgcccgcatcctgcccgaggaaaaggtcctgcggctccac
tatgccaactgcaaggcctacaatgctgactttgatggagacgagatgaacgcccacttc
cctcagagtgaactgggccgggccgaggcctacgtcctggcttgcacagaccaacagtac
cttgtgcccaaggatggccaaccactggcaggattgatccaagatcacatggtttcaggg
gcaaacatgaccatccgaggctgctttttcactcgggagcagtatatggagctggtgtac
cggggactcacagacaaagtagggcgcgtgaagctctttcctcccgccatcctgaagccc
tttccactgtggacaggaaagcaggtcgtgtccacgctgctcatcaacataatcccggag
gaccagatcccactgaacttattgggaaaggcaaagattggtggcaaagcttgggtgaag
gaggctcctcggcccgttcccggctttaaccccaacttgatgtgcgagtcccaggtggtc
atcagggacggggagctgctgtgcggggtgctggacaaggcacattacgggagctccgcc
tacggcctggtccactgctgctacgagatctatggcggggagaccagcggcaaggttctc
acttgcctggcccgcctcttcaccgcctacctgcagctctatagaggcttcaccttgggc
gtggaggacattttggtcaagccgagggctgatgtccggagacacaggatcattgaagag
tccacccgctgtggtccccgggctgtcagggccgcattaaacttgccagaagcggcatcg
tgtgatgaagtccgagggaaatggcaggatgcccatctgagcaaagaccagagggatttt
aacatgattgatctgaagttcaaggaggaagtgaaccatcacagcaatgaaattaacaag
gcgtgcatgcctttgggcctgcacagacagttcccagagaacaacttgcagatgatggtc
cagtcgggagccaagggttcaactgtgaacaccatgcagatctcgtgcctgctgggtcag
atcgaactggaaggccggagacccccactgatggcatccggcaagtctctgccctgcttc
gagccttatgagttcacccccagggctggcggcttcgtcactggcagattccttacaggc
atcaggcctcctgagttcttcttccactgcatggccgggcgagaggggctggtggacact
gcggtgaagaccagccgctcgggctatctccaaaggtgcatcatcaagcacctggagggg
ctggtcgtccagtatgacctgacggtccgggacagcgacggcagcgtggtgcagttcctg
tacggggaggacggcctggacatccccaagacacagttcctgcagcccaagcagttcccc
ttccttgccagcaactacgaggtgataatgaaatcgaagcatctccgtgaggttttatcc
aaagcagagcccaaaaaagctctccgccacttcagagccatcaagaaatggcaaagcaga
cattctaactccctgctgagggagggcgccttcttgaactattcccagaagattcaggca
gctgtgaaagctttgaacctcgagggcgcaaaccagaacggccgcagccctgagactcac
caggtgttgaggatgtggagtgagttggatgagcaaagccgaaggaaataccagaagaag
gcggctccttgtcccgaccccagtctgtctgtgtggcgcccggacatctacttcgcatca
gtgtcagaaacgtttgagaagaagatggatgactacagccttgagtgggcagcccaggca
gagaagagtcacgagaagtcggagctctctctcgaaaggttgaggactctgctgcagctg
aagtggcagcgctcgctgtgcgacccaggtgaggccgtgggcctgctggccgcccagagc
atcggggagccctccacacagatgaccctgaacaccttccactttgccggcagaggcgag
atgaacgtcaccctgggcatcccaaggttgagggagatcctcatggtggccagcgccaac
atcaagacgcccatgatgagtgtgcctgtgttcaacaccaggagagcgctgaagaaagtg
aaaagcctgaagaagcaactcaccagggtgtgcctcggggaggtgttggagaaaattgac
gtccaggagtccttctctatgggagagaaacaggccaagttccgggtgtatcagctgcgg
tttcagttcctgccatacgcctgctaccagcaggagaagtgcctgagacccgaggatatc
ctgcacttcatggaaacaagattctttaaaattctgatggaatccatcaagaagaagaac
aataaagcatcaacttttaggaacgtgaacacacggagagctacccagcgggatctggat
gactctggggagtcagagaggactcggggagatcgggaaggtgacgatgaagaggagggg
cacattgtggatgccgaagcagaggagggagatgctgacgcctcggatgccaaacgcaag
gagaaacaagaggaggaggtcgattacgagagtgaggaggacgaggagaaggaggaggac
gagaaggaggacgaggacatccaggaggaagggagcatccgaggagaaggtttccaccag
gagcaggaggaggaggagggcttgggcccggaggaggactcactccctgcagcccccctg
acgcagcctcggaagcccacccgcagccgggagccccagggcgccgaggcagtggagcgc
cgggtgcgggccgtgcgagagtgccacccactcatcgaggactaccagtatgacaccgag
gccagcctgtggtgccaggtgacagtgaagctcccgctcatgaaggtcaactttgacatg
agctccctggtagtgtccttggcacaaggcactgtcgtctatgcgaccaagggcatcacg
cggtgcctcctgaatgaaaccaccaacagtaagaatgagaaggagctggtcttaaacacg
gaaggcatcaacctcccggagctgttcaagtacgctgaggtcctggatttgcgccgcctc
tattccaatgacatccacgcgatggccaacacatatggcatcgaggcagcgctgcgggtg
atcgagaaggagatcaaggacgtgttcgccgtgtacggtatcgccgtggacccccgccac
ctctccctggtcgctgactatatgtgcttcgagggtgtttacaagccactgaaccgcttt
gggatccggtccaactcctcccctctgcagcagatgacgtttgaaaccagcttccaattt
ctgaagcaggccaccatgatggggtcccacgacgagctgaggtctccgtccgcctgcctc
gtggtcgggaaggttgtcagaggtgggacgggcctgtttgagctcaagcagcccctgaga
taa
DBGET
integrated database retrieval system