Sus scrofa (pig): 100737040
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Entry
100737040 CDS
T01009
Symbol
POLR2A
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03020
RNA polymerase
ssc03420
Nucleotide excision repair
ssc05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100737040 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
100737040 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
100737040 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
100737040 (POLR2A)
03400 DNA repair and recombination proteins [BR:
ssc03400
]
100737040 (POLR2A)
Enzymes [BR:
ssc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100737040 (POLR2A)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100737040 (POLR2A)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100737040 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
100737040
NCBI-ProteinID:
XP_020923484
Ensembl:
ENSSSCG00000027897
ENSSSCG00000028278
LinkDB
All DBs
Position
12:52779833..52806210
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVXPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGXEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagcga
gtgcagttcggcgtcctcagtccggatgaactgaagcgaatgtccgtgacggagggcggc
atcaaatacccagagacaaccgagggaggccgccccaagctgggggggctgatggatcca
aggcagggggtgatcgagaggactggccgctgccagacgtgtgcaggaaacatgacagag
tgtcctggccactttggccacattgagctggccaaacctgtgttccacgtgggcttcctg
gtgaagacaatgaaagttctgcgctgcgtctgcttcttctgctccaaattgctggtggac
tctaacaacccaaagatcaaggacattttggccaagtccaaggggcagcccaagaagcgg
ctcacacacgtctatgacctctgcaagggcaagaacatctgcgagggcggcgaggagatg
gacaacaagttcggggtggagcagcccgagggcgacgaggacctgaccaaagagaagggc
cacggtggctgtgggcggtaccagcccaggatccggcgctccggcctggagctctatgcc
gagtggaagcacgtcaacgaggactcgcaggagaagaagatcctgctgagtcccgagcgg
gtgcacgagatcttcaagcgcatctcggatgaggagtgtttcgtcctgggcatggagccg
cgctacgcccggcccgagtggatgatcgtcaccgtgctgcccgtgcccccgctctccgtg
cggcccgctgtggtcatgcagggctctgcccgcaaccaggatgacctgacgcacaaactg
gccgacatcgtgaaaatcaacaatcagcttcggcgcaacgagcagaacggcgcggcggcc
cacgtcatcgccgaggacgtgaagctcctccagtttcacgtggccaccatggtggacaac
gagctgcccggcctgcctcgcgccatgcagaagtctgggcgtcctctcaagtccctgaag
cagcggttgaagggcaaggaaggccgcgtgcgggggaacctgatgggcaagcgggtggac
ttctcggcccgcaccgtcatcacccccgaccccaacctctccatcgaccaggtcggcgtg
cctcgctccatcgccgccaacatgaccttcgcagagatcgtcacccccttcaacattgac
aggcttcaggagctggtgcgcagggggaacagccagtacccgggagccaagtacatcatc
cgggacaacggcgatcgcattgacttgcgtttccaccccaagcccagtgatcttcacctg
cagactggctataaggtggaacggcacatgtgtgacggggacatagttatcttcaaccgg
cagccaactttgcacaaaatgtccatgatgggacatcgagtccggatcctcccctggtct
acttttcgcttgaaccttagtgtgacaactccgtacaatgccgactttgatggggatgag
atgaacttgcacctgccgcagtccctagagacacgggcggagatccaggagcttgccatg
gtgccacgcatgattgtcnacccccagagcaatcgccctgtcatgggcattgtgcaggac
acgctgactgcagtgcgcaaattcaccaagagggacgtcttcctggagcggggggaggtg
atgaacctgctgatgttcctgtccacgtgggacggcaaggtcccgcagccagccatcctg
aagccccggcccctgtggacggggaagcagatcttctccctcatcatacccggccacatc
aactgtatccgcacccacagcacccatcctgatgacgaggacagcggcccgtacaagcac
atctctcctggggacaccaaggtggtggtggagaacggggagctgatcatgggcatcctg
tgtaagaagtctctgggcacgtccgctggctccctcgtccacatctcttaccttgagatg
ggtcacgacatcactcgcctcttctattccaacattcagaccgtcattaacaactggctc
ctcatcgagggtcataccattggcatcggggactccattgctgattctaagacttaccaa
gacattcagaacactattaagaaggccaagcaggatgtaatagaggtcatcgagaaggcg
cataacaacgagctggagcccacccccgggaacactctgcggcagacctttgagaaccag
gtgaaccgcattctcaatgatgcccgagacaagactggctcctccgcccagaaatccctg
tctgaatacaacaactttaagtctatggtcgtgtctggggccaaaggttccaagatcaac
atctcccaggtcattgctgtcgtcgggcagcagaacgtggagggcaagcggatcccattt
ggattcaagcaccggactctgcctcacttcatcaaggatgactatgggcccgagagccgt
ggctttgtggagaactcctacctggccggcctcacacccaccgagttcttcttccacgcc
atggggggtcgtgaggggctcatcgacacagcggtcaagactgccgagactggctacatc
cagcgacggctgatcaagtccatggagtcggtgatggtcaagtacgacgccaccgtgcgg
aactccatcaatcaggtggtgcagctgcgctacggcgaggacggcctggccggcgagagc
gtcgagttccagaacctggctaccctgaagccctccaacaaggctttcgagaagaagttc
cgcttcgattataccaacgagcgggccctgcggcgcacgctgcaggaggacctggtgaag
gatgtgctcagcaacgcgcacattcagaacgagctggagcgagaattcgagcggatgcgt
gaggaccgggaggtgctccgggtcatcttcccaacgggcgacagcaaggtggtcctcccc
tgtaacctgctgcgcatgatctggaacgcccagaagatcttccacatcaaccctcgcctc
ccctccgacctgcaccccatcaaggtggtagagggagtcaaggagttgagcaaaaagctg
gtgattgtgaatggggacgacccactgagccggcaggcccaggagaacgccaccctgctc
ttcaacatccacctgcggtccacgctgtgctcccgccgcatggccgaggagtttcggctc
agtggagaggcctttgactggctgctcggagagatcgagtccaagttcaaccaagccatt
gcccatcccggagagatggtgggagctctggctgcacagtcccttggagaacccgccacc
cagatgaccttgaacaccttccactatgccggtgtgtccgccaagaacgtgaccctgggt
gtgccccgccttaaggagctcatcaacatttccaagaagccaaagaccccctcgctcact
gtcttcctgctgggccagtctgctcgagatgccgagagagccaaggacattctgtgccgc
ctggaacatacaacattgaggaaggtgacggccaacacagccatctactacgaccccaac
ccccagagcacagtggtggcagaggaccaggaatgggtgaatgtgtactatgagatgccc
gacttcgacgtggcccgaatctccccctggcttctgcgggtggagctggaccggaagcac
atgactgaccggaagctgaccatggagcagattgccgaaaagatcaatgctggtttcggt
gacgacctgaattgcatctttaatgacgataatgcagagaagctggtactccgtatccgc
attatgaacagtgatgaaaacaagatgcaagaggaagaagaggtggtggacaagatggat
gacgacgtcttcctgcgctgcatcgagtccaacatgctgaccgacatgaccctgcaggga
ntcgagcagatcagcaaggtgtacatgcacctgccgcagacggacaacaagaagaagatc
atcatcacggaggacggggagttcaaggccctgcaggagtggatcctggagacggacggc
gtgagcctgatgcgcgtgctgagcgagaaggacgtggaccctgtgcgcaccacgtccaat
gacatcgtggagatcttcacggtgctgggcatcgaggccgtgcggaaggccctggagcgg
gagctgtaccacgtcatctccttcgatgggtcctacgtcaattaccggcacctggctctg
ctgtgtgacaccatgacctgtcgtggccacttgatggccatcacccgacacggggtcaac
cgccaggatacgggccctctcatgaagtgctcctttgaggaaacggtggacgtgctcatg
gaagcagccgcgcacggagagagcgaccccatgaagggcgtgtcggagaacatcatgctg
ggccagctggccccggccggcaccggctgctttgacctcctgctcgacgccgagaagtgc
aagtacggcatggagatccccaccaacatccccggcctgggcgccgccggccccactggc
atgttcttcggctcggcacccagtcccatgggaggaatttctccagccatgaccccctgg
aaccagggtgcaactccggcctatggcgcctggtctcccagcgtcgggagcgggatgacc
ccaggggcagccggcttctctcccagcgctgcttcagatgccagcggcttcagccccggt
tactccccagcctggtctcccacgccaggttccccgggctccccgggcccctcaagcccg
tacatcccctcaccagggggtgccatgtctcccagctactccccgacgtcgcccgcctac
gagccccgctcccctgggggctatactccccagagtccctcttactcccccacctccccc
tcctactcccctacctctccatcttattctccaaccagtcccaactacagtcccacctcg
cccagctactccccaacctctcccagctactcgcccacctcacccagctactccccgacc
tcccccagctactcgcccacctcgcccagctactcacccacttctcccagctactcgccc
acctcgcccagctactcgcccacctcccccagctactcgcccacctcgcccagctactca
cccacttctcccagctactcgccaacttcccccagctactcgcccacctcgcccagctac
tcgcccacatctcccagttactctccgacatcccccagctactcaccaacttccccaagt
tactcacccaccagccctaactattctccaaccagtcccaattacaccccgacgtcaccc
agctatagcccgacgtcacccagctactcacctactagtcccaactacacgcccacaagc
cccaactacagcccaacctcgccgagctactcccccacttcgcccagctactccccgacc
tcgccgagctactccccttcgagcccacgatacaccccccagtctcccacctatacccca
agctcccccagctacagccccagctcccccagctacagccctacctcgcccaagtacacc
ccaaccagtccttcctacagccccagctcgccggagtacaccccgacctctcccaagtac
tcgcccaccagccccaaatactcgccaacctctcccaagtactcgcccaccagccccacc
tactcgcccaccacccccaaatactcgccaacgtctcctacttactcaccaacctctccg
gtctataccccaacctcccccaagtattcacccactagccccacttactcgcccacctcc
cccaagtactcgcccaccagccccacctactcacccacgtcccccaaaggctccacctac
tcgcccacctctcctggctactcgcccaccagccccacctatagcctcaccagcccagcc
atcagcccggacgacagtgatgaggagaactga
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integrated database retrieval system
