Sus scrofa (pig): 110259950
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Entry
110259950 CDS
T01009
Symbol
CACNA1H
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H isoform X1
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04010
MAPK signaling pathway
ssc04020
Calcium signaling pathway
ssc04713
Circadian entrainment
ssc04925
Aldosterone synthesis and secretion
ssc04927
Cortisol synthesis and secretion
ssc04929
GnRH secretion
ssc04934
Cushing syndrome
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
110259950 (CACNA1H)
04020 Calcium signaling pathway
110259950 (CACNA1H)
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
110259950 (CACNA1H)
04925 Aldosterone synthesis and secretion
110259950 (CACNA1H)
04927 Cortisol synthesis and secretion
110259950 (CACNA1H)
09159 Environmental adaptation
04713 Circadian entrainment
110259950 (CACNA1H)
09160 Human Diseases
09167 Endocrine and metabolic disease
04934 Cushing syndrome
110259950 (CACNA1H)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssc04040
]
110259950 (CACNA1H)
Ion channels [BR:
ssc04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
110259950 (CACNA1H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
110259950
NCBI-ProteinID:
XP_020942524
LinkDB
All DBs
Position
3:complement(40637420..40694616)
Genome browser
AA seq
2341 aa
AA seq
DB search
MTEGALAAEEVRVPLGAPAPGPAAAASPASPGAPGSETERGSGPSASSPESPATERGAEL
GTDEEQPVPYPALAATVFFCLGQTTRPRSWCLRLVCNPWFEHVSMLVIMLNCVTLGLFRP
CEDVECRSERCSILEAFDDFIFAFFAAEMLIKMVALGLFGQKCYLGDTWNRLDFFIVMAG
MMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFF
IFGIVGVQLWAGLLRNRCFLDSTFARNSNLSFLRPYYQPEEGEENPFICSSRRDNGMRKC
SHIPSRRELRVECTLGWEAYGQPQAEGEDGAGRHACINWNQYYNVCRSGDSNPHNGAVSF
DNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQ
FSETKQRENQLMREQRSRYLSNDSTLASFSEPGSCYEELLRYVGHVCRKLKRRSLRLYAR
WQSRWHKKVDPSASLHGQGPGRRVRRAGGRAASIHHLVYHHHHHHHHHYHFSHSSPRRPG
PEPGARDTRLLRAGVPPSPGHAPPDTESVHSVYHADCHVEGPQERARAVHAAATAAASLK
LATSLGAMNYPTILPSAAGDSRGGPGLKGKRAGGPAGAGGHSPLSSPDPCEKIQHLVGEH
GLGQAPSRLSGLSVPCPLPSPQAGTLTCELSSCPYCTSALEDPELEFSGSDSGDSDSNGV
YEFTQDVRHGDRRDPMRSPPVADAPGPGSARRRAQRRAAGERAGPGRVWASLSSKLRHIV
DSKYFNRGIMVAILTNTLSMGVEYHEQPDELTNALEISNIVFTSMFALEMLLKLLACGPL
GYIRNPYNIFDGIIVVISVWEIIGQADGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMK
TMDNVATFCMLLMLFIFIFSILGMHLFGCKFSLKTDTGDTVPDRKNFDSLLWAIVTVFQI
LTQEDWNVVLYNGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDATRSDTD
EDKMSTHLEEDLDTFRDLRATELKMFSLAVTPNGHLQGRGSLPPPLIMRTAATPMPTPKS
FPHLDATPGLLDSRRGSSSSVDPQLGDQKSLSSLRSSPCAHWGPNSAWSSRRSSWNSLGR
APSLKRRSQCGERESLLSCEGKGGGSTDEEAEDGRPRPGASPTTRATPLRRTESLDHRST
LDLRPPRPATLLPTKLHDCNGQVLALPSEFFLRVDSHKEDPAEFDDDVEDSCCSRLQKVL
EPYKPECCRSREPWALYLFSPQNRFRGSCQKIIAHKMFDHVVLVFIFLNCITIALERPDI
DPSSTERLFLSVSNYIFTAIFVAEMTVKVVALGLVSGEHAYLQSSWNVLDGLLVLVSLID
IVVALASAGGAKILGILRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICC
AFFIIFGILGVQLFKGKFYYCEGADTRNISTKAECRAAHYRWVRRKYNFDNLGQALMSLF
VLSSKDGWVNIMYDGLDAVGIDQQPVPNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENF
HKCRQHQEAEEARRREEKRQRRLERKRRSKAPLVPVTVAVAGTFPNPEAQRRPYYADYSP
TRRSIHSLCTSHYLDLFITFIIGVNVITMSMEHYNQPKSLDEALKYCNYVFTIVFIVEAA
LKLVAFGFRRFFKDRWNQLDLAIVLLSIMGITLEEIEMNAALPINPTIIRIMRVLRIARV
LKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGL
SRHATFSNFGMAFLTLFRVSTGDNWNGIMKDTLRECAREDKHCLSYLPAISPIYFVTFVL
VAQFVLVNVVVAVLMKHLEESNKEAREDAELDAELELELAQRPPARPSPAAPQSPGAGPD
PSNLLVVRKVSVSRMLSLPNDSYMFRPVAPAAAAHPHPPQDVEMESYAGASGLVTSIHSP
PAESCTSLQVPSAASSPARGAGHSPSLSRLLCRQEALATQSLEGQVGSPGDSSPSWGEPG
RKTPGRQATLGASVCSPPRSPRPASVRIRKHTFGQHCISSRPPAPGREEAEAPDPADEEV
SHITSSARGPVASPAACEPDLHRLYSVDAQGFLDQPGQADEQRRPSVEQGCGDGLPEAGV
VKARAPEAELALGARRKKKMSPPCISVEPPAEDEGTARPPVAEGSSTTLRRRTPSCEAAP
HRDPLEPLDSAGLDAAAKGERRGQAPCRTDHLTVPSFAFEPLDMGAPGGDPLSDGSHGVT
PEPRPCPGAMVPPEPQQMEPSVLSGDPPEEGERLHLTVPQSPLKKGPPPAPAPGDGVDKP
V
NT seq
7026 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagggcgcgctagcggccgaagaggtccgagtgcccctgggcgcgccagcccca
ggccctgcggcggcggcatcccccgcgagccctggggcgccgggatcagagacggagcgg
gggtcggggcccagtgcgtcgtcccccgagagcccagcgaccgaacgtggtgcggagctg
ggcaccgacgaggagcagcccgtcccgtacccggcactggcggccacggtctttttctgc
ctcgggcagaccacgcggccgcgcagctggtgtctccggctggtctgtaacccgtggttc
gagcatgtcagcatgctggtcatcatgcttaactgtgtgaccctgggcctgttccggccc
tgcgaggacgtcgagtgccgctcggagcgctgcagtatcctggaggcctttgacgacttc
atcttcgccttcttcgcggccgagatgctcatcaagatggtcgccctggggctgttcggg
cagaagtgctacctgggcgacacgtggaaccggctggacttcttcatcgtcatggcgggc
atgatggagtactctctggatggacacaacgtgagcctctcggccatccggacggtgcgc
gtgctgcggcctctccgcgccatcaaccgtgtgcccagcatgcggatcctggtcacgctg
ctgctggacacactgcccatgctcgggaacgtcctcctgctctgcttctttgtcttcttc
atctttggcatcgtgggtgtccagctttgggctggcctgctgcgaaaccgctgcttcctg
gacagtaccttcgccaggaacagcaacctcagcttcctgcggccgtactaccagcccgag
gagggggaggagaaccccttcatctgctcttcccgccgggacaacggcatgcggaagtgc
tcacacatccccagccgccgcgagctgcgcgtggagtgcacgctgggctgggaggcctac
gggcagccacaggctgagggcgaggatggcgccggccgccacgcctgcatcaactggaac
cagtactacaacgtgtgccgctcgggcgactccaaccctcacaacggggccgtcagcttc
gacaacatcggctatgcctggattgccatcttccaggtgatcacgctggagggctgggtg
gacatcatgtactacgtcatggacgcgcactccttctacaacttcatctacttcatcctg
ctcatcatcgtgggttcctttttcatgatcaacctgtgcctggtggtgatcgccacgcag
ttctcggagacgaagcagcgggagaaccagctgatgcgggagcagcggtcccgctacctg
tccaacgacagcaccctggccagcttctcggagccgggcagctgctatgaggagctcttg
cgttacgtgggccatgtgtgccgcaagctgaagcgccgcagtctgcgcctctacgcccgc
tggcagagccgctggcacaagaaggtggaccctagtgcctccctgcatggccagggcccc
gggcggcgggtgcggcgggcgggcgggcgcgccgcctccatccaccacctggtgtaccac
catcaccaccaccaccaccaccactaccacttcagccacagcagcccgcgccggccaggc
cccgagccaggcgccagggacaccaggctgctgcgggccggagtgccgccctcgcccggg
cacgcgccccccgacaccgagtcggtacacagcgtgtaccacgcagactgccacgtggag
gggcctcaggagagggcccgggcagtgcatgccgcggccactgctgctgccagcctcaag
ctggccaccagcctgggtgccatgaactaccccaccatcctgccctcggccgcgggggac
agcagaggtggccccgggctcaaggggaagcgggctggcgggccggcgggagccggggga
cacagccccctgagcagcccagacccttgtgagaagatccagcacctggttggagagcat
ggactgggccaggcccccagccgcctgtcgggcctgagcgtgccctgccctctgcccagc
ccccaggcgggcacgctgacctgtgagctgagcagctgcccgtactgcaccagcgccctg
gaggaccctgagctggagttcagcggctcagacagcggagactcagacagcaacggggtc
tatgagttcacgcaggacgtgcgccacggggaccgccgcgaccccatgcggtcgccccca
gtggcggatgcaccgggtccgggcagcgcgcggcggcgggcacagcggcgggcggctggc
gagcgggccgggccgggccgagtgtgggcctccttgagcagcaagctgcgccacatcgtg
gacagcaagtacttcaaccgcggcatcatggtggccattctcaccaacacgctgagtatg
ggcgtcgagtaccacgagcagcccgacgagctgaccaacgccctggagatcagcaacatt
gtgttcacgagcatgtttgccctggagatgctgctgaagctgctggcctgcggcccgctg
ggctacatccggaacccctataacatcttcgatggcatcatcgtggtcatcagcgtgtgg
gagatcatcgggcaggcggacggcgggctgtcggtgctgcggaccttccggctactgcgg
gtgctgaagctggtgcgcttcatgccggcgctgcggcgccagctggttgtgctcatgaaa
accatggacaacgtggccaccttctgcatgctgctcatgctcttcatcttcatcttcagc
atcctcggcatgcacctctttggctgcaagttcagcctgaagacggacaccggagacacg
gtccccgacagaaagaacttcgactcgctgctgtgggccatcgtcaccgtgttccagatc
ctgacccaggaggactggaacgtggtcctgtacaacggcatggcctccacctcgtcctgg
gccgccctctacttcgtggctctcatgacctttggcaactacgtgctcttcaacctgctg
gtggccatcctggtggagggcttccaggccgagggcgacgccaccaggtccgacacagac
gaggacaagatgtccacccacttggaggaggatttggacacgttcagagacctcagggcc
acagagctgaagatgttctcgctggcggtgacccccaacgggcacctgcagggccggggc
agcctgcctccgcccctcatcatgcgcacggcggccacacccatgcccacccccaagagc
ttcccacacctggacgccacccctggcctcctggactcccggcgcggcagcagcagctcc
gtggacccccagctgggggaccagaagtctctgtccagcctccgcagctctccctgcgcc
cactggggccccaacagcgcctggagcagccggcgctccagctggaacagcctgggtcgc
gcacccagcctcaagcgccggagccagtgcggcgagcgggagtcgctgctgtcctgcgag
ggcaagggcggcggcagcaccgatgaggaggccgaggacggcagaccccggcctggggcc
tccccgaccacgcgtgccacgccgctgcggcgcactgagtccctggaccaccgcagcacg
ctggacctgcggcccccacggccggccaccctgctgcctaccaagctccacgactgcaat
gggcaggtgctggccctgcccagcgagttcttcctgcgcgttgacagccacaaggaggac
ccagcggagtttgacgatgacgtggaggatagctgctgctcccggctgcagaaagtgctg
gaaccctacaagcctgagtgctgccggagccgagagccctgggccctgtacctcttctcc
ccacagaacaggttccgcggctcctgccagaagatcattgctcacaagatgttcgaccac
gtcgtcctggtcttcatcttcctcaactgcatcaccatagccctggagaggccggacatc
gaccccagcagcaccgagcgcctgttcctcagcgtctccaactacatcttcacggcgatc
ttcgtggccgaaatgacggtgaaggtggtggccctgggtctggtctcgggcgagcacgcc
tacctgcagagcagctggaacgtgctggacgggctgctcgtcctggtgtccctgatcgac
attgtcgtcgccttggcctcggccggcggcgccaagatcctgggtatcctgcgggtgctg
cgcctgctgcggactcttcggcccctgagagtcatcagccgcgccccgggcctcaagctg
gtggtggagactctgatctcgtcacttaggcccatcggaaacattgtcctcatctgctgt
gccttcttcattatcttcggcatcctgggggtgcagctcttcaaggggaagttttactac
tgcgagggcgcagacaccaggaacatctccacgaaggccgagtgccgggccgcgcactac
cgctgggtgcgacgcaagtacaacttcgacaacctgggccaggcgctgatgtccctgttc
gtgctctcatccaaggacggctgggtgaacatcatgtacgacgggctggatgccgtgggc
atagaccagcagccggtgcccaaccacaacccctggatgctgctctacttcatctccttc
ctgctcatcgtcagcttcttcgtgctcaacatgttcgtgggcgtcgtggtcgagaacttc
cacaagtgccggcagcaccaggaggcggaggaggcgcggcggcgggaggagaagcggcag
cggcgcctggagaggaaacgcaggagtaaggcgcccctggtgccggtgacggtggcggtg
gcgggcactttccccaacccagaagcccagcgccggccctactatgctgactactcaccc
acacgccgctccatccactccctgtgcaccagccactacctggacctcttcatcaccttc
attatcggggtcaatgtcattaccatgtccatggagcactacaaccagcccaagtctctg
gacgaggccctcaagtactgcaactacgtgttcaccatcgtcttcatcgtggaggccgcg
ctgaagctggtggcctttgggttccgcagattcttcaaggacaggtggaaccagctggac
ctggccatcgtcctgctgtccatcatgggcatcacactggaggagatcgagatgaacgcg
gccctgcccatcaaccccaccatcatccgcatcatgcgtgtgctgcgcattgcccgcgtg
ctgaagctgctcaagatggccacgggcatgcgggccctgctggacacggtggttcaggcg
ctgccccaggtagggaacctgggtctgcttttcatgctcctgttttttatctatgctgcc
ctgggcgtggagctgtttgggaggcttgagtgcagtgaggacaacccctgtgagggcctg
agcaggcacgccaccttctccaacttcggcatggccttcctcacgctgttccgcgtgtcc
accggggacaactggaacgggatcatgaaggacacgctgcgggagtgcgcccgtgaggac
aagcactgcctcagctacctgccggccatctcgcccatctacttcgtcacgtttgtgctg
gtggcccagttcgtgctggtcaacgtggtagtggccgtgctcatgaagcaccttgaggag
agcaacaaggaagcccgtgaggatgccgagctggacgccgagctcgagctggagctggcg
cagaggccgcccgcccgccccagtcccgcggccccgcagagcccgggcgcggggccggac
ccctccaacctgctggtcgtgcgcaaggtgtccgtgtccagaatgctgtcgctgcccaac
gacagctacatgttccggccggtggcgcccgctgcggccgctcacccccacccgccgcag
gacgtggaaatggagagctacgcgggcgcctcaggcctggtcacctccatccactcgcca
cccgcggaatcctgcacctccctccaggtcccgtcggctgcatcctcccctgcaaggggt
gcaggtcactccccaagtctcagccggctgctctgcagacaggaggccctggccacccag
tccctggaggggcaggttggcagccccggggacagcagtcccagttggggagagcctggc
aggaagacccccgggaggcaggcgaccctgggggcctccgtgtgctccccaccccgttcc
ccacggcccgccagtgtccgcatccgcaagcacacttttgggcagcactgcatctccagc
cggccaccagccccaggcagggaggaggctgaggccccggacccggccgacgaggaggtc
agccacatcaccagctccgcccgcggccccgtggcctcgcctgcggcctgcgagccagac
ttgcaccggctctacagtgtcgatgcccagggcttcctggaccagccgggccaggcggac
gagcagaggcggccctcggtggagcagggctgcggggatggcctcccagaggcgggggtg
gtgaaggctcgggccccggaggctgagctggccctgggcgcacgcaggaagaagaagatg
agcccgccctgcatctctgttgagccccccgcagaggacgagggcacagcccggccccct
gtggctgagggcagcagcaccaccctccggcgaagaaccccgtcctgcgaggccgcgccg
cacagggaccccctggagcccctggacagtgcagggctggacgctgccgccaagggggag
cggcggggccaggccccctgccgcacagaccacctgaccgtcccgagctttgcctttgag
ccactggacatgggggctcctggtggggacccgttgtcagatggcagccatggggtcacc
ccagaacccagaccctgtcctggtgccatggtgcctcccgaaccccagcagatggagccc
tcagtgctctcgggagaccccccagaggagggggagaggctgcacctcacagtcccgcag
agccccctgaagaaagggccccccccagcccccgctccaggcgacggtgtagacaagccc
gtgtag
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integrated database retrieval system
