Syngnathus scovelli (Gulf pipefish): 125972195
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Entry
125972195 CDS
T08785
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03440
Homologous recombination
sscv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125972195
03460 Fanconi anemia pathway
125972195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125972195
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125972195
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
125972195
FA (Fanconi anemia) pathway
Downstream FA components
125972195
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Motif
Other DBs
NCBI-GeneID:
125972195
NCBI-ProteinID:
XP_049581614
LinkDB
All DBs
Position
Unknown
AA seq
1072 aa
AA seq
DB search
MTSSLEYIIGGVRIQFPCKAYPSQLAMMNSIIRGLNSGQHCLLESPTGSGKSLALLCSTL
GWQQAQFAKSVPGERLPSELVETNQFSHIGDEANFQPERKRIRTAEPKSPESCFQCPCAS
AKDSAKNKDGNRKVPKIFLGTRTHKQITQIVHEMKRTGYSTAPMTILSSRDYTCVNPDVA
PLANRNDLCKDLMEAKNLSLDWIWVFLRTGVWQLDREDSGVGLCTLDSCTVQKMGSQSTM
QLIHGIHQAWDIEDLVSLGKRLHSCSYYAARELMKGSDIIFCPYNYLLDPLIRENMEINL
AGHILVLDEAHNIEDCARESASFTLDHNSLLMCRDELDSMVNNNIRRLKHEPLRDFCYSL
VNWIWQSQSLMSDMEYEDASKVWNGDEILSIFHTLGITPENVRMLKQNMAAVLEKEEIIG
FINGKDNRMQVPTISSSSSSILKGLFMVLDFLYRDNCRYSEDYRVVLQKTYSWIRKDMSN
MSDAQGFMAQQGQTQHPRVRGKTGSLSLSFWCLNPAVVRLPMYLAFSDLSGTVHSIVLTS
GTLAPMASFSLELGVKFSVQLEANHVINKSQSWQFEWHLQCPKANLIHRTVVKYSVVWVG
TVGVGPQGRKLCATFQHSETYAFQDEVGALLLNVCKVVPKGVLCFLPSYKMLNKMRDRWN
ITGVWEKLEKQKEVITEPRGGGKNDLDELLQAYYNAIKSCEKRDGALFMAVCRGKVSEGL
DFTDDNARAVITIGIPFPNIKNLQVELKMKYNDQHSKSRGLLSGHQWYEIQAYRALNQAL
GRCIRHRNDWGALILVDDRYRSNPSKYIKGLSKWVRQLVQHYDTFSSAMQSLVKFSQELQ
KCCYLTDTQNSTISFPSSITITKALQDLPKPVDFSSHSQINTECGEQEWQRVTHDHFSAP
LLHPPPALLTSEQQQILSLQKKSEDSVIELSAAVKSSEFKKRKSKTLTSHSNASSKLTLT
NKTDENKEDKTVFFTPELFKAEEADTHEGAEIESPSQIIFGAECRTLHPQNFFGSELAQV
SRSDEKRVVAIDATKIGLPGREDTNVAGEHVRNKIRLSRSRQKAHLSLTDKS
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgacatcatcgttggagtacatcattggaggtgtgcggatccagttcccgtgtaaggcg
tatccatcccagctggccatgatgaattcaatcatacgagggttgaattctgggcagcat
tgtttgctggagagtcctactggaagtggcaagagtctagccttgctatgttcaacgctc
ggatggcagcaggcacagtttgctaagtcagttcccggagaaaggttaccctctgagctg
gttgagacaaaccagttttcccacattggtgacgaagcaaatttccagcctgagaggaaa
cgcattcgcactgcagaacccaagtcccctgaatcatgcttccagtgcccatgtgcatca
gccaaggatagtgcaaaaaataaagatggaaacaggaaggtccctaagatttttttgggc
acacgtactcataaacaaataactcaaattgttcatgagatgaagcgtactggatactcc
actgctccaatgaccatattatccagcagagattatacatgtgtcaacccagatgtggca
cctctcgccaaccggaatgacctctgcaaggacctaatggaagctaaaaatctctcactg
gactggatttgggtgttccttaggactggggtctggcaactagacagagaagatagtggt
gttggtctttgcactctggattcctgcacagtgcagaaaatgggcagccagagcacaatg
cagttgatccatggaattcaccaagcctgggacattgaggacctggtctcattgggcaaa
cggcttcattcatgttcatattatgctgctcgtgaactcatgaaaggctccgacatcatc
ttctgtccttataactacctgttagatccactaatcagagagaatatggagattaatctt
gcaggccacatattagttctggatgaagcccataatattgaagactgtgctcgggaaagt
gccagcttcacgttagaccataatagtttgctgatgtgcagggacgagcttgacagcatg
gtcaacaacaacatccggcgtttaaaacacgagcctcttagggatttttgctatagttta
gtcaactggatctggcagagccaaagcctaatgtctgatatggaatatgaagatgcatct
aaagtttggaatggagatgagatactcagcattttccacaccctgggtatcactcctgaa
aatgtccggatgctgaagcaaaacatggctgcagtgcttgaaaaggaggagattatagga
tttataaatggcaaagataacagaatgcaggtcccaacgataagctcatcatcatccagt
atcctcaaaggactcttcatggttcttgactttctctacagagacaactgcaggtattct
gaagactacagagttgtacttcaaaagacatattcttggataaggaaagacatgtccaac
atgagtgacgcgcagggcttcatggcccaacaaggtcaaacgcaacacccaagagtcaga
gggaagactggatctctgtcactaagtttctggtgcctcaatcctgctgtggtgagatta
cctatgtacttggccttttctgacttaagcgggacagtgcacagcattgttctaacgtca
ggaacattggcgccaatggcatccttctccttggaacttggagtaaaattttctgttcaa
ctggaggccaaccatgtcatcaacaaatctcagagttggcaattcgaatggcacctacag
tgtcctaaagccaatttaattcacaggacagtggtaaaatattctgtggtttgggttggc
actgttggtgtaggacctcaaggtagaaagctctgtgccacctttcaacattctgaaaca
tatgccttccaggatgaagttggtgccctgctactgaatgtctgcaaagttgtgcccaag
ggtgtgctttgcttcttgccttcctacaagatgctcaataagatgcgggatcggtggaac
atcaccggtgtttgggaaaaacttgagaaacaaaaagaagtgataacagagccccgtggt
ggtggcaagaacgacttggatgaactacttcaggcttactacaatgcgattaagtcttgt
gagaaaagagatggtgctctgttcatggctgtgtgtcggggaaaagtgagtgaaggactg
gacttcacagatgacaatgccagagcagtgatcactattggaatcccattcccaaatatt
aaaaatctccaggtcgaactcaagatgaaatacaatgatcagcactcaaagagtagaggt
cttctctctggccatcagtggtatgagattcaggcttaccgagctctaaaccaggccctg
ggaaggtgtattcgacacagaaatgactggggtgccctaattcttgtggatgaccgttat
aggagtaatcctagcaagtatatcaaaggtctgtccaaatgggttcgccaactagtccag
cattatgacaccttctccagtgctatgcaatcccttgttaagttctctcaagaactacag
aaatgttgctatctgacagacacccagaactcaaccatctccttcccaagcagcataacc
ataactaaggcattacaagatttacccaaaccagtggatttttcatcccactcacaaatt
aacactgaatgtggtgaacaagaatggcaaagggtgacacacgatcatttttcagcgccg
cttttacatccgccacctgcccttctaacctcagagcaacaacaaattctctctctgcaa
aagaagtcagaggactcagtcattgaattatcagctgcagttaaatccagtgaattcaaa
aagaggaaatcgaaaacactaacatcccattcaaacgccagtagtaaattgactctaaca
aacaaaacagatgaaaacaaagaggacaagactgttttttttacacctgaactttttaaa
gcagaagaagctgatacccatgaaggagctgagattgaatctccatcacagatcattttt
ggagcagagtgtcgaaccttgcacccacagaatttttttggatctgagcttgcccaagtt
tctcggtcggatgaaaagcgcgtagttgcaatcgacgcaacaaagatagggttaccgggc
agagaagatactaatgttgcaggagagcatgtaagaaacaagatcaggctgtcaagatcc
agacagaaagctcacctttctctaacagataagtcatag
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integrated database retrieval system
