Syngnathus scovelli (Gulf pipefish): 125979542
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Entry
125979542 CDS
T08785
Name
(RefSeq) neurogenic locus notch homolog protein 1 isoform X1
KO
K02599
Notch 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
125979542
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
EGF_2
Ank_2
Ank
Notch
NOD
NODP
Ank_3
Ank_4
Ank_5
cEGF
EGF_3
JAG1-like_EGF2
DL-JAG_EGF-like
Motif
Other DBs
NCBI-GeneID:
125979542
NCBI-ProteinID:
XP_049593832
LinkDB
All DBs
Position
Unknown
AA seq
2496 aa
AA seq
DB search
MHAVSRLLAVNAASVKVVVVRFAAASPVVVVEAAVVTGVVAPLVIGAFFPMRGAGLKCSL
PTESCLNGGRCEAAPNGNGDCKCPSDYVGNRCQFPNPCSPSPCRNGGECRAVSHGNTFDF
RCVCRLGFTDRLCLTPTNHACMSSPCRNGGTCDLISLTAFRCRCSPGWSGKTCQHPNPCA
SNPCANGGQCSAFDSNFICTCPPAFHGQTCKQDVNECAQSPTPCLNGGVCVNEVGSYHCR
CPQDYSGPHCENRYVPCSPSPCQNGGTCVQKGDSVYECSCLPGFTGHNCEHNIDDCPGHS
CQNGGVCADGVNTYNCQCPPHYTGQYCTENVDECELMPNACQNGGTCHDTHGSYHCVCVN
GWTGDDCSENIDDCASAACYHGATCHDRVASFFCECPHGRTGLLCHLDDACISNPCQKGS
NCDTNPVNGKAICTCPPGYTGSACNSDIDECSLGANPCEHGGRCLNTKGSFQCKCLQGYE
GPRCEMDVNECMSNPCHNDATCLDQIGGFHCICMPGYEGVFCHVNTDECASQPCLNNGKC
VDKINSFHCECPQGFSGNLCQVDIDECASTPCKNGAKCTDGPNKYTCECAEGYTGQHCET
DINECYSDPCHYGTCKDGLASFTCYCRPGYTGRLCETNINECLSQPCRNGGTCQDRENTY
ICSCPKGTAGFNCEINLDDCKSHPCDYGRCIDKLNGYECACEPGYTGTMCNINIDDCAIN
PCHNGGTCVDGINGFTCLCPEGYNDATCLSQVDECGSNPCIHGRCHDLINSYKCTCDSGW
SGPNCDINNNECESNPCMNGGTCKDMTSGYHCTCRAGFTGPNCQTNINECASNPCLNQGT
CMDDVAGYKCNCQLPYTGENCETLLAPCNSRPCKNGGLCKESEDYQSFSCSCPAGWQGQT
CEIDINECVKSPCRNGALCHNAMGSYQCKCLPGYTGQKCETDVDDCKPNPCSNGGFCRDG
INTFTCTCPPGFRGGRCEQDINECESNPCRNGANCTDCVNSYTCTCPPGFSGINCEINTN
DCTDSSCFNGGTCADGINAFTCLCLPGFTGSYCQYDINECDSRPCLNGGTCLDSFGTYKC
TCPPGYTGVNCQNLIRWCDSSPCKNGGQCWQKGASYTCQCQSGWTGLYCDIPSVSCEVAA
KQQGVEVAHLCRNSGQCLDAGSTHYCRCQAGYTGSYCQEQVDECSPNPCHNGAACTDYLG
GYSCECLPGYHGVNCSKEINECQSQPCQNGGTCIDLINTYKCSCPRGTQGVHCEINLDDC
NPFSDPLTHEPKCFNNGKCVDRIGGYQCVCPAGYVGERCEGDVNECLSDPCDPRGSYNCI
QLTNSYRCECRTGYTGQRCDKVFDGCKGRPCRNGGTCAVASNTPHGFICKCPPGFTGSSC
EYDSRSCGNLNCKNGGTCVSGHLGPRCLCPPAFTGPECLTPTDSLCISNPCYNGGTCQIT
PDAPYFQCSCPSNFNGLLCHILDYSFVGGFGRDITPPPEVEVSCENPQCDEWAGNHICDS
LCNNHACGWDGGDCSLNFDDPWQNCSAALQCWRYFNDGKCDGQCNSPGCLYDGFDCQGQE
GQCNPLYDQYCKDHYADGHCDQGCNNAECEWDGLDCANNMPEKLADGHLVLVVHISPEQL
KNRSSAFLRDLSGVLHTNVVFRRDAKGEPMIFPYYGNEQDLVKHNVLKRSTDGWPEWAAM
PANVLGQMKDTVSAMVSPRKRRELDSLQVKGSIVYLEIDNRQCYQQSSECFQSATDVAAF
LGALASSGNLHVPYIEAVTSVRPTPSSSELYPMYVVFLGLAALGFVSLGVLVSRKRRREH
GQLWFPEGFRASEPSKKKRREPVGEDSVGLRPMKICDINLMDDNQNEWGDEDPDCRRFKF
EEQSMLDLRDRTDQRKWTQQHLDAADLRIASVAPTPPQGETENDCMDVNVRGPDGFTPLM
IASCSGGGLETANSEEEEDPSAEIITDFIYQGANLHNQTDRTGETALHLAARYARSDAAK
RLLESSADANVQDNMGRTPLHAAVAADAQGVFQILIRNRATDLDAHMHDGTTPLILAARL
AVEGMVEELINCHADANGTDDSGKSALHWAAAVNNVQAAVMLLKNGANKDMQDNKEETPL
FLAAREGSYETAKILLEHFANREITDHLDQLPRDIAQERMHHDIVRLLDEYNVVRSPGLH
AAPLSTSSSLSPSLCSPNDYLSNLKPNLSVKKVRKGGKDGGKDNRVKKKKSLDGKGNLLD
TSAVLSPVDSLESPHGYLSDAASPPMTSPFQQSPPISLNHLQGKGDSHMGQMSMPFDPNP
PRLSHMPVSSPNSQGSTSIGGGRVSQCDWMSRMHPGSFHQASPMSHNMMGGLSGVSTATL
SQIMGYQNLQTTHLGSAAHMMQQAHSRQLQHQNSNSATAGQSMTQSFPAMELNGGNEMQQ
NNGRSMAIHSVMPQETQILGAQFLTPPSQHSYSGPMDNTPNHQLQVPDHPFLTPSPGSPD
QWSSSSPHSMSDWSEGISSPPTSIHSQMNLIPEQFK
NT seq
7491 nt
NT seq
+upstream
nt +downstream
nt
atgcacgctgtgagcagactgctcgctgtgaacgctgcgtcggtcaaagtcgtcgttgta
cgcttcgccgccgcgtcgccggtagtcgtcgtcgaagctgctgtcgtaaccggggtagta
gcgccactggtcatcggagccttctttcctatgagaggtgcaggtcttaaatgctcacta
cccactgagtcctgcctgaatggaggaaggtgtgaagccgcccccaatgggaacggagac
tgcaagtgtcccagtgactacgtaggcaaccgatgtcaatttcccaacccgtgcagcccg
tcgccgtgccgcaatggcggcgagtgccgcgccgtctcccacggcaacactttcgacttc
cgctgcgtgtgccgactgggtttcaccgaccgcctgtgcctcaccccgaccaaccacgct
tgcatgagctccccctgtcgcaatggaggaacgtgcgacctcatctcgctcacggccttc
cgctgccgctgctcgcctggatggtctggcaaaacgtgtcaacaccccaacccgtgcgct
tccaacccgtgcgcaaatggcggccagtgctcggccttcgattccaacttcatctgcacc
tgcccgccggccttccacggtcaaacctgcaagcaagacgtcaacgagtgcgcccagagc
ccgacgccctgcctcaacggcggcgtctgcgtcaacgaggtgggctcgtaccactgccgc
tgccctcaggactacagcgggccgcactgtgagaaccgctacgtgccgtgcagcccgtcg
ccgtgccagaacgggggcacctgcgtccagaagggggacagcgtctacgagtgtagctgt
ctgccaggattcacgggtcacaactgtgagcacaacattgacgactgcccgggccacagc
tgccaaaatggcggcgtatgtgccgatggagtcaacacctacaattgtcaatgcccgcct
cattacacaggccaatactgcaccgagaacgtggacgagtgcgagctgatgcccaacgcg
tgtcagaacggcggcacctgccacgacactcacgggagctaccactgcgtttgcgtcaac
ggctggacgggagacgactgcagcgagaacatcgacgactgcgccagcgccgcctgttac
cacggcgccacctgtcatgaccgtgtggcctccttcttctgcgaatgtccgcatggacgt
acaggtttgctgtgccacctggacgacgcttgcatcagcaatccgtgtcagaaaggctcc
aactgtgacaccaacccagtcaacggaaaagccatctgcacttgcccgccgggttacacc
ggctcggcctgcaactcggacatcgacgaatgctccctcggcgccaacccttgcgagcac
ggcggccgctgtctcaacaccaaaggctcgttccagtgcaagtgtcttcaagggtacgag
ggcccgcgatgcgagatggatgtcaacgagtgcatgtccaatccgtgccacaacgacgcc
acctgcctggatcagatcggaggattccattgcatctgcatgccaggttacgagggggtc
ttctgccatgtcaacacggacgagtgcgccagccagccttgtctcaataacggcaaatgc
gtggacaagatcaactccttccactgcgagtgtcctcaaggattttcaggaaatctgtgc
caggttgatatcgacgagtgcgccagcaccccttgtaaaaacggagccaagtgtaccgac
ggtcccaataagtacacctgtgaatgtgctgaaggttacacagggcagcattgcgagacg
gacatcaacgagtgctactcggacccgtgccactacggcacctgcaaggacggcctggcc
tcgtttacatgctactgccgtcccggctacacgggccgcctgtgcgagaccaacatcaac
gagtgtctcagccagccctgcaggaacggcggcacttgccaggatcgggagaacacctat
atctgttcctgccccaaaggcaccgcgggtttcaactgcgagatcaacctggacgactgc
aagagtcacccctgcgattacgggcggtgcatcgacaagctcaatggctacgagtgtgcg
tgtgagccgggttacacaggaacaatgtgcaacatcaacatcgacgactgcgccatcaat
ccgtgccacaacggcggcacgtgcgtggacggcatcaacggcttcacctgcctctgcccc
gagggctacaacgacgccacctgcttgtctcaagtggacgaatgcggcagcaatccttgc
atccacggccggtgccacgacctcatcaacagctataaatgcacctgcgactctggctgg
agcggccccaattgcgacatcaacaacaacgagtgcgaatctaacccgtgcatgaacgga
ggcacctgtaaagacatgaccagcggctaccactgcacatgcagagcgggcttcacagga
cccaattgtcaaactaacatcaacgagtgtgcatccaacccgtgcctcaaccaaggcacc
tgcatggatgacgtggcaggatacaagtgcaactgtcagctgccctacaccggtgaaaac
tgcgagactttgctggctccctgcaactcgagaccgtgcaaaaatggcggactatgtaaa
gagtctgaagactaccagagcttctcatgcagctgtcccgccgggtggcaaggtcaaact
tgcgagattgatatcaacgaatgcgtgaaaagcccgtgccgcaatggagcgctttgtcac
aacgcgatgggaagctaccagtgcaagtgcttgcccgggtacacgggtcagaagtgcgag
actgacgtcgatgattgcaagccaaatccgtgcagcaacggcggtttttgccgcgacggc
atcaacacgttcacgtgtacgtgcccgcccggcttccgcggcggcagatgcgagcaggac
atcaacgagtgcgagagcaacccgtgccgcaacggcgccaactgcaccgactgcgtcaac
agctacacctgcacctgcccgcccggtttcagcggcatcaactgtgagatcaacaccaac
gactgcaccgacagctcttgcttcaacggcgggacgtgcgcagatggcatcaacgccttc
acctgcctgtgcctgcccggatttaccggcagctactgtcaatatgacatcaacgagtgt
gactcaaggccgtgtctcaacggtggcacctgcctggacagttttggaacgtacaagtgc
acctgcccgccgggttacacgggggtcaactgccagaatctcatacgctggtgcgattcg
tccccctgcaaaaacgggggccaatgctggcaaaagggggcttcctacacctgccagtgt
caatctggctggaccggcctctactgtgacatccccagcgtgtcctgtgaagtcgcagct
aaacagcaaggtgtggaagtggctcacctgtgccggaattccgggcagtgcttggacgcc
ggaagcacgcattactgccgctgccaggcaggctacacgggcagctactgccaggaacaa
gtggacgagtgctcccctaacccgtgccacaacggagcggcgtgcactgattaccttgga
ggctacagttgcgaatgtctccccggttaccatggcgtcaactgctccaaggagatcaat
gaatgccagtctcagccctgtcagaatggaggcacttgcatcgatctcatcaacacatac
aagtgttcctgtcccagaggaacccaaggtgtccattgtgagattaatctagatgactgc
aacccgttcagcgacccgctgacccacgagcctaaatgcttcaacaacggcaaatgcgtg
gatcgcatcgggggctaccagtgcgtgtgcccggcgggctacgtgggcgagcgctgcgaa
ggcgacgtcaacgagtgcttgtcggatccttgcgacccccgaggctcttacaactgcatc
cagctcaccaacagttatcgttgcgaatgccgcaccggatatacaggccagcgttgcgac
aaagtttttgacggctgcaaaggaagaccttgcaggaatggaggcacgtgtgcggtcgcc
agtaacactcctcatggcttcatttgcaagtgcccacccggcttcactggctcctcctgc
gagtacgattctcgctcctgcgggaatctaaactgcaagaacggaggcacgtgcgtatcg
ggccacctgggcccgcgctgcctgtgcccaccggctttcaccggacccgagtgcctgacc
ccgaccgacagcctctgcatctccaacccgtgctacaacggcggcacttgccaaatcacg
cccgacgcgccgtacttccaatgcagctgtcccagcaatttcaacggcctgctgtgccac
atcctggactactccttcgtgggtggcttcggtcgtgacatcacacctccaccggaagtg
gaggtgagctgcgagaacccccagtgcgacgagtgggccggcaaccacatctgcgactcg
ctgtgcaacaaccacgcgtgcggctgggacggaggagactgctccctgaatttcgacgac
ccctggcaaaactgctcggcggctctgcagtgctggcgctacttcaacgacggcaagtgc
gatggccagtgtaacagccccggatgcctttacgatggctttgactgccagggccaggaa
gggcaatgcaacccactttacgaccagtactgcaaagaccactacgccgacggccactgc
gatcaaggctgcaataacgccgagtgtgaatgggacggcctggattgcgccaacaacatg
ccagaaaagctagcagatggacatttagtcctggtggtccacatctcgccggagcagctt
aaaaatcgctcttcggccttcctcagagacctcagcggggttcttcacaccaacgtggtg
ttccgccgtgacgccaaaggggagcccatgatcttcccttattacggcaacgagcaggac
ctggtgaagcacaacgtgctgaagcgctcgacggacggctggcccgagtgggcggccatg
ccggccaatgttttgggtcaaatgaaagacaccgtgtctgccatggtcagcccacgcaaa
cgcagagagctggattctctgcaagtcaaagggtcgatagtctacctggagatcgacaac
cgccagtgttaccagcaatccagcgaatgcttccaaagtgccacggatgtcgcagcgttc
ctcggagcgctagcgtccagcgggaatctccacgttccctacattgaagctgtcaccagt
gtgagaccgactccttcaagttcagagctctatcccatgtacgtggtcttcctgggatta
gcagcgttgggtttcgtcagcctcggcgttttggtgtcacgcaagcgacgacgagaacac
ggccagctttggttcccggaaggattcagagcgtcagagcccagcaaaaagaaacgcaga
gaaccggttggggaagattctgtcggactgaggcctatgaaaatatgtgacatcaacctc
atggacgacaatcaaaacgaatggggcgacgaggatcccgactgtaggcgtttcaagttt
gaggagcagtccatgctggatctgagggaccgaactgaccagaggaaatggacccagcag
cacttggatgcggccgacctgcgtatcgcgtccgtcgccccgacgcctccccaaggggag
acagagaatgactgcatggacgtcaacgtcagaggaccagacggcttcaccccactgatg
atcgcctcgtgcagcggcggaggactggagaccgctaacagcgaagaggaagaggatcct
tccgcagagatcattacagacttcatttaccaaggcgcaaacctccacaaccagacggac
cgcacgggcgagacggccctccatttggccgcccgctacgcccgctccgacgccgccaag
cgcctgctggagtccagcgccgacgccaacgtccaggacaacatgggacgcactcctctt
catgctgctgtagctgctgacgcacagggggtgttccagattttaatccgaaaccgtgcg
acggatcttgatgcgcacatgcacgacgggacaacgccgctgatcctggctgccaggttg
gcagttgagggcatggtggaagagctcatcaattgccacgccgacgccaacggcaccgac
gattctggtaaatctgcgcttcactgggccgcggctgtcaacaatgtgcaggctgcagtc
atgctgctgaaaaacggtgccaacaaagacatgcaagacaacaaggaagagacgccactc
ttcctcgccgcacgtgaaggaagctacgagacagccaagattcttctggagcactttgct
aaccgtgagatcaccgaccatctggaccagctgccgagggatatcgcccaggagcgcatg
caccacgacatcgtgcgcctgctggacgagtacaacgtggtccgcagcccgggccttcac
gccgcccctcttagcacctcctccagtctttcgccatcgctctgctcgcccaatgactac
cttagcaacctgaaacccaacttgtcggtcaagaaggtgcgcaaaggaggcaaagacggc
ggcaaagacaacagggtgaagaagaagaagtcgctggacgggaagggcaatttgctggac
acgtcggccgtgctgtccccggtggactccctggagtccccccacggctacctgtccgac
gctgcctctcctcccatgacgtcaccattccagcagtcacccccgatatccctcaatcat
cttcaagggaagggcgactcgcacatgggtcagatgagtatgccttttgatcccaaccca
cctcgactttcccacatgccggtgtccagccctaatagtcaggggagcacgtctataggg
ggcggcagggtcagccagtgcgactggatgtccaggatgcacccgggcagcttccaccag
gcttcacccatgtcccacaacatgatgggaggcctcagcggcgtcagcacggccactttg
tcacagatcatgggctaccagaacctacagaccacccacctgggctcggcagctcacatg
atgcagcaggcccactcgcgccagctgcaacaccagaactccaactcggccacggccggg
cagtccatgacgcagagcttccctgccatggagctgaacggcggcaacgagatgcagcaa
aacaacgggcgctccatggccatccacagcgtgatgccccaggagacgcaaatcctcggg
gcccagttcctcacccctccttctcagcacagctattcggggcccatggacaacacaccc
aaccaccagctgcaggtgcccgaccacccgtttctgacgccctcgcccggctcgcccgac
cagtggtccagttcgtccccacattccatgtccgactggtcggagggcatctcaagtcca
ccgaccagcatccactcgcagatgaatctgatcccagagcagttcaagtag
DBGET
integrated database retrieval system
