Syngnathus scovelli (Gulf pipefish): 125980952
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Entry
125980952 CDS
T08785
Name
(RefSeq) glutamate receptor ionotropic, NMDA 3B
KO
K05214
glutamate receptor ionotropic, NMDA 3B
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04020
Calcium signaling pathway
sscv04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
125980952
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
125980952
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125980952
Ion channels [BR:
sscv04040
]
Ligand-gated channels
Glutamate (ionotropic)
125980952
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
Sporozoite_P67
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
125980952
NCBI-ProteinID:
XP_049596625
LinkDB
All DBs
Position
Unknown
AA seq
1313 aa
AA seq
DB search
MVPLSGPWTHRLAAGGPPRLLLFLALLLLGALSSQEPCTLPPPSCHILARIGHSVRLGAL
LPARQPARIQNALNRALASLRHQNAAAAATTSDSTYTSSTPGSGNPARSLPLLPYNLSLE
VLARSPAGWDPASLSRCACQELVVRGVSAVLAFPRSSEELVQVEFLSSFLETPFISILED
TEPLVTKNAFHLQMSARVPPSSLGSLLLAVLQAGDGDHVDGGEDGGWRGAAVLCPGWEEG
SDGLLSHLQSHSGAAWHLWNVVNLTNGAGEERREDQREEEVLRILSTRLLRAASPVSSVL
LLGSDPECLSSVLRVAQRLAPSLPALQWIMGYPLSPDSLHTLGGPLGLLAYGEVGRKPIS
FYIRDALQLIGRAITVAAAARPDLALIQNMVNCYDKATRREPPSSGRYLSRFFSNTSFTG
ATGLIQVDADLSRVLSSQLFHVWSLKRGALGQPAWVTVGQWSRGRLELEGGVQGLAGGFS
SSQGQGLGAGVRGSDGQGDFNPGGRWRPGLSVEGHRLRVVTLVEHPFVFTREVDEDGLCP
AGQLCLDPRTNRSDVIQGLFNQLHNPNASAADWEGSGLPEDLRKCCYGYCIDLLEKLAED
MGFTFDLYIVGDGKYGAMSGGGRWTGLVGDLRSGTADMAVTSFSINSARSRVIDFTSPFY
STSLGILVRSQDTAAPIGAFMWPLHWSMWVGIFVTLHLTALFLTLYEWNSPFGMTPHGRN
RVRVFSYSSALNLCYAILFGRTVATKTPKCWTGRFLMNLWAIFCLLVLSSYTANLAAVMV
GEKTFEQVSGIHDDKLHHPSLGFRFGTVRESSAEDYMKKSFPEMHDYMRRFNQPTTPEGV
RMLKTDPPSLDAFIMDKALLDFEVSIDADCKLLTVGKPFAIEGYGIGLPQGSPLTRNVSE
FVSRYKSDGFMDMLHDKWYKVVPCGKRVFAVTETLQMGIQHFSGLFVLLCMGVGGALLTL
AGEHTFYHLVIPRLRNRHTLQYWLHTSQKIHRALHTTYEDEGKELTGLEQSASSCISDNC
SLHRKQHQQAPPPSPPKSLPASSGSSSSPSHEPKEKRVHFDLDTLHSYRLRTHTASVRGR
PGMVGRPGLGLGGLGLPSLGNLGLQANGGPVSALASAGLVLSPLGGRGGQTSLWEGELQE
LQEKIEIFRNQLREALARRAEIQTSLERERSGAVRRDTSLERERDRLRVQTISTDKSSAP
QPDRTGQTLNNQPQQVIPGNLALGNVGPLNTINSLDRGRAPQLRSVPLPAEDRTGQSRAA
SSASLDRSRFGQLGAAQSARNTLSLDRQKASLTRVLSTLDRTRSSHSDAGGGA
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atggtgcccctctccggaccctggacccaccgcctcgctgccgggggacccccgcgcctc
ctcctcttccttgcgttgctgctcctcggcgccctctcgtcgcaggagccatgcacactg
ccaccgccgtcgtgccacatcctcgcccggatcggacacagcgtgcgcctcggcgcgctg
ctgcccgcccgccagccggcccggatacagaacgcgctcaaccgcgccctagctagcctc
cggcaccagaacgccgccgcagctgcaaccacctcggactccacctacacctccagcacc
ccgggcagcggcaacccggctcggagcctcccgctgctgccctacaacctgagcctggaa
gtgctggctcgctccccggccggatgggaccctgcgtcgctgtcccgctgcgcttgccag
gagctggtggtgcgcggggtgagcgccgtgctcgcctttccgcgctccagcgaggagctc
gtccaggtggagttcctctcctctttcctggagacccccttcatctccatcctggaggac
accgagcccctggtcactaagaacgccttccacctgcagatgtcggcccgcgtgcctccg
tcgtcgctgggcagcctgctgctcgccgtcctgcaggcgggcgacggggaccacgtcgac
ggcggggaggacggcggctggcgaggcgcggccgtgctttgccccggttgggaggaaggc
agcgacggtctgctgtcccacctgcagagccacagcggggccgcctggcacctgtggaac
gtggtcaacctgaccaacggcgctggcgaggagaggcgggaggaccagagggaggaagag
gtcctgcgaatcctctccacacgtttactccgggccgcctcgcccgtctccagcgtcctc
ctgctaggctccgaccccgagtgcctctcttcggtgcttcgggtggcccagcggctcgcc
ccgtcgttgccggccctgcagtggatcatgggctacccgctgtcgccggactccctgcat
actttggggggccccctgggacttctggcctatggggaagtggggcgcaagcctatcagc
ttctacattcgcgatgcgctgcagctgattggccgagctatcacggtggcagccgcagcc
aggcccgacttggcgctgatacagaacatggtcaactgttacgataaagccacgcgacgg
gaaccgccttcttcgggacgatatctgtccaggtttttctccaacacctccttcactggt
gcaacaggcctgatccaggtggacgctgacctctccagagttctttcctcacagctcttc
catgtctggagccttaagaggggcgccttgggccagccggcctgggtgactgtcggtcag
tggtcccgaggcaggttggagttggaaggcggtgtccaggggctggcgggaggcttcagc
agcagccagggtcaaggcctcggcgccggggtgaggggaagtgacggtcaaggggatttt
aaccccgggggacgctggaggcctgggctgtctgtggaggggcatcgtctgcgggtggtc
accctggtggaacacccgtttgtgtttacccgtgaggtggacgaggacgggttgtgtccc
gcgggacagctctgtctggaccccaggaccaacaggtcggatgtgatacaaggactgttc
aaccagttgcataacccaaacgcatcagcagcagattgggaaggcagtggccttccggag
gatctgcggaagtgctgctacggctactgcatcgacctgctggagaagctggcggaggac
atgggctttacctttgacctctacattgtcggggacgggaagtacggggccatgagcggc
ggcggccgttggacgggcctggtgggcgacctgaggagcggcacggcggacatggcggtc
acctcgttttccatcaactcggccaggagcagagtcatagacttcacttcgcccttctac
tccaccagcctgggcatcctggtgcgtagtcaggacaccgccgcccccatcggcgccttc
atgtggcccctccactggtccatgtgggtgggcatcttcgtcacgctgcacctcaccgcc
cttttcctcaccttgtacgagtggaacagccccttcggcatgaccccccacgggcgcaac
agggttcgggtcttctcctactcctccgccctcaacctgtgctacgccatcttgtttggc
cgtaccgtggccaccaagacccctaagtgctggacgggccgcttcctgatgaacctgtgg
gccatcttctgcctgctggtgctctccagctacacggccaacctggccgccgtcatggtg
ggcgaaaagaccttcgagcaggtgtcgggaatccacgacgacaagctgcaccatccgtcg
ctgggcttccggttcggcacggtgcgggaaagcagcgccgaggattacatgaagaagagc
tttcccgaaatgcacgactacatgcggcgcttcaaccagcccaccacccctgagggcgtg
cggatgctcaagacggatcctcccagtctggatgccttcatcatggacaaagccctgcta
gatttcgaggtgtccatcgacgcagactgtaagctgctgacggtgggcaagccgttcgcc
attgaaggctacggcatcggcctgccgcaaggttcacctctgacccgcaacgtgtccgag
ttcgtcagccgctacaagtcagacggcttcatggacatgctgcacgacaaatggtacaag
gtggtcccctgcgggaagcgcgtctttgccgtcactgagacgctccagatgggcatccag
cacttctcgggcctgtttgtgctgctgtgcatgggggtgggcggcgccttgctgaccttg
gcgggcgagcacaccttttatcacctggtcatcccgcgcctccggaacagacacacgctg
cagtactggctccacaccagccagaaaattcaccgagcgctccacacgacgtatgaggac
gaaggtaaagagctgacggggcttgaacaaagcgcctcctcttgcatctcagacaactgc
agcctgcatagaaagcagcatcagcaggctcccccgccgtccccccccaaatccctcccc
gcctccagtgggagctcctcatcgccgtcccacgagcccaaggaaaagcgggtgcacttt
gacctggacaccctccacagctaccggctgcgcacccacactgcctcagtgcggggacgc
cccggcatggtgggccggcccgggctgggcctcggcggcttgggcctccccagcttgggg
aatttgggcctccaagccaacggagggcccgtctcggcgctggcatccgcgggtttggta
ctctctcctttggggggcaggggcggacagaccagcctgtgggaaggggagctgcaggag
ctccaggagaagatcgagatctttcgaaaccagctgagggaggcgctggccaggagggcg
gagatccagaccagcctggagcgggaacgcagcggagcggtacgtcgggacactagcctg
gagcgggagcgggaccggctgcgggtccaaaccatcagcacagacaaaagcagtgcccct
cagcccgacagaaccggacagactctcaacaaccagcctcagcaggtcattcccgggaac
ctcgcgctcgggaacgtcggcccgctgaacacaatcaacagcctggaccgagggcgagcc
ccccagctacgttcggttcccctcccggcggaggatcggaccggccagtcgcgtgccgct
tcttccgccagtttggaccgaagtcggttcggccagctcggcgccgcgcaatcggcccgg
aacactctgagcctcgaccggcagaaggcgagcctgacgcgcgttctcagcactttggac
aggacaagatccagccattcagacgcagggggcggggcttga
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