Syngnathus scovelli (Gulf pipefish): 125983516
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Entry
125983516 CDS
T08785
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2A
KO
K05209
glutamate receptor ionotropic, NMDA 2A
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04020
Calcium signaling pathway
sscv04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
125983516
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
125983516
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125983516
Ion channels [BR:
sscv04040
]
Ligand-gated channels
Glutamate (ionotropic)
125983516
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NMDAR2_C
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
125983516
NCBI-ProteinID:
XP_049600810
LinkDB
All DBs
Position
Unknown
AA seq
1548 aa
AA seq
DB search
MSLSSTRSKRRSRRSSGWARGSGGHAVLLSLALLVVVTYITNPVVAQKQRSGGAAEKVPV
LNIAVILGRTRYISDRDIRALWGKEEPIDVNVVSLLVNETDPKSIITHMCDLMSGTKIHG
VVFGDGTDQEAIAQILDFISSQTLIPILGIHGGSSMIMADKDDKSTFFQFGASIQQEALL
MLNIMEEYDWHIFSIVTSKFPGYQEFINILKTTVDNSFVGWDLQNIITLDAVEEDSRSQI
MLKKVQSPVVLLYCSKDEAVYILEEARSLGLTGFGYIWIVPSLTTGNPEITPEAFPSGMI
SVSYDDWDYPLEARVRDGLGIITSAAAAMLDEYGDIPEARTSCYGQMEKTSKLPPSALHK
YMMNVTWEGRDLSFTDDGYQEHPKLVVIVLNKEREWEKMGKLDNSSLTLKYPVWPRFNSF
GDAELDDNHLSIVTLEEKPFVIVEDVERLTGTCMRNSVPCRKHIKDNTTEAGGTYIKKCC
KGFCIDILKKIAKYVKFTYDLYLVTNGKHGKKINNVWNGMVGEVVYKKAVMAVGSLTINE
ERSEVIDFSVPFVETGISVMVSRSNGTVSPSAFLEPFSASVWVMMFVMLLLVTAMAVFMF
EYISPLGFNRNLAQGKDPHGPSFTMGKAVWLLWGLVFNNSVPVQNPKGTTSKFIVSVWAF
FAVIFLASYTANLAAFMIQEEFVDQVTGLSDNKFQNPYAYSPPFRFGTVPNGSTERNIRK
NYPSMHQYMVKYHQTGVQDALVSLKSGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGYIF
ATTGYGIALQKGSYWKRQVDLAILAIIGDGEMEELEAQWLTGICHNEKNEVMSSQLDVDN
MAGVFYMLATAMGLSLITFVSEHLFYWRLRYCFTGVCTGTPGLLFSISRGIWSCIHGVHI
DMKKKTDLDFSPQDKMLKLIKSAKHMTNMSNLAGSHMNSPKREFMHSAGPMIMDMMAEKG
NFIYADNRSYAPKDVMYGDTGDLQSYLATRHKDHLNNYIFQGGQHPLTLNDANPNSVEVA
VNADTVQTNAKPPRTLWKKSVDTLRSVPPGTSPMPDMLMPDPRMSMKTQRYLPEEAAHSD
ISDCSSRAASYKDPENNKHLKPKDNLKKRPVTSKYPRDCSEVELSYLKTKQVSGGTNQLV
RGAGEKIYTIDSDREMSLHSDPVHYRESRGLAADELEYPEIYSDHSDNYRKCDQPIIHLN
SSPLHHPDSDLLPDPTYGKHYNMKEKNLSPHESIDRYKQTHCRSCLSKVTTAGYPPGGTF
TPTGSATASSTRSPYNRCEACLHTANLYDISEDQLLADTLVSPTMHHQQPQQQQQQQQQP
DEMFGLYWPQTDGPHVQKRNRLRLNRQHSFDNILLEKPKDSDQGRPARSVSLKEKDRFLD
STADSHYANLFSMRPYSGRLFGSGSQSMMFNHNLEESKRSKSLYPAHGSENPFLSHSLRD
DTSSRLIHGRSSSDIYKQLAVASPAAILGAAPIKTCNDANNLRSSVKSTTSYCSRDGRIA
NDMYKKEHVMPYAANKTCAYPASRGVLNSAQLSNRRVYKKIPSLESDV
NT seq
4647 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcagcagcaccagaagcaagaggaggagtagaaggagcagcggttgggcccgt
ggcagcgggggtcatgctgtgctgctttccttagctctactggtggtggtgacctatatc
accaacccggtggtagctcaaaagcagcgaagtggaggtgccgccgagaaagtgccggtc
ctaaatatcgccgtgatcctgggccgcacgcgttacatctcggaccgagacatccgggca
ctgtgggggaaagaggaacctattgacgtcaatgtggtcagtctgctcgtgaatgagacg
gaccccaaaagcatcatcacccacatgtgtgacctgatgtccgggacaaagatccacggt
gtggtgtttggggatggcacggaccaggaggccatcgcccagattttggattttatttcc
tcgcagacgctcatacccatcctgggcattcatggaggctcgtccatgatcatggcggat
aaggacgataagtcaacgttcttccagttcggtgcttccatccagcaggaggctctgctg
atgctgaacatcatggaggagtacgactggcacatcttttctatcgttacgtcaaagttc
cccggctaccaggagttcatcaacattctaaaaacgacagtagacaacagttttgttggc
tgggacctgcagaatatcatcactctggatgcagtggaggaagacagccggtctcagatc
atgctgaagaaggtccagtcgccggtcgttctcctctactgctccaaggacgaggccgtc
tacatcctggaggaggctcgctctctgggcctcacaggcttcggttacatctggatcgta
ccttctctgaccaccggcaacccggaaataacccccgaagcattcccatcaggaatgatt
tcagtctcctatgatgactgggattatcctttggaagctcgcgtgcgtgatggtttgggg
atcataacgtcagcggcagcggccatgttggatgaatacggcgacatccccgaagctcga
acgtcttgttacggccagatggaaaaaaccagcaagctgccacctagcgcactacacaag
tacatgatgaatgtgacatgggaaggcagagacttgtctttcacggacgatgggtatcaa
gaacatccaaagttggtggtcattgttctgaacaaagagagagagtgggagaagatgggg
aagctggacaacagcagcctgacactcaagtatccagtctggcctcgcttcaactccttc
ggcgacgccgaacttgacgacaaccacttgtccatcgtcaccttagaggagaagccgttt
gtcatcgtggaggatgtcgagagactgaccggtacctgcatgaggaactctgtgccctgc
aggaaacatatcaaagacaacacaaccgaggctggagggacatacatcaaaaaatgctgc
aaaggcttctgcattgacattttgaagaagatagccaaatacgtcaagttcacctatgac
ctgtacctagtaaccaatggcaaacatggaaagaagattaacaatgtctggaatgggatg
gtgggagaggtggtctataagaaagccgtcatggccgtcggatctctgacgatcaatgag
gagcgttctgaggtcatcgatttctccgtcccattcgtggaaactgggatcagcgtcatg
gtgtcccgtagtaatggaaccgtgtccccttcagcctttcttgagccgttcagtgcatca
gtgtgggtgatgatgtttgtgatgctcctactggtgactgcaatggctgtttttatgttt
gaatacatcagtcctctcggcttcaacagaaacctggcgcaggggaaagacccccacggg
ccttccttcaccatgggcaaagctgtgtggcttctctggggtctggtcttcaacaactcc
gtcccggtgcaaaatccaaagggaaccaccagcaagttcatcgtgtccgtgtgggccttc
tttgctgtcatcttcttggcttcctacactgccaacttggccgctttcatgattcaggaa
gagtttgtcgaccaagtcactgggctttctgataataagtttcagaacccgtatgcttac
tcgccgccattccgctttggaacggttccaaacggatctacggagaggaacatcaggaag
aactacccttccatgcaccagtacatggtcaagtatcaccaaacaggagttcaggatgct
cttgtcagcttaaaatctggtaaactggatgccttcatctatgatgccgcagtgttgaac
tacatggctggcagagatgagggatgtaagctggtgaccattggcagcgggtacatcttt
gctaccactggatatggcatcgctctccaaaaaggttcttactggaaacgtcaggtggat
ctggcaattctggccattattggagatggtgaaatggaagaattggaggctcagtggtta
acgggcatttgccacaacgagaaaaatgaggtgatgtcaagccagctagatgtggacaac
atggcgggggtcttctacatgctcgccactgccatggggctgtccctcatcacctttgtc
tctgagcatctcttctattggaggctcagatactgcttcactggggtctgcactggcaca
ccaggtcttctcttcagcattagtcggggtatctggagttgcatccacggagttcacatc
gacatgaagaaaaaaaccgatctggactttagcccgcaagacaagatgcttaagctgatt
aaatcagccaagcacatgaccaacatgtcaaacctggccggctctcacatgaactcaccc
aaacgtgagttcatgcactcggcgggcccgatgatcatggacatgatggcagagaagggc
aacttcatctacgctgacaaccgaagctatgctcccaaagacgtgatgtacggggacacg
ggggacttgcagtcgtatcttgctacccgccacaaagaccacctgaacaactacatcttc
caaggaggccagcatcctctcactttgaatgatgccaatcccaattcggtggaggtagcg
gttaacgctgacacggtccagacaaacgccaaacctcctcgaaccctgtggaagaaatcg
gtggacacgcttcgctcggtgccgccgggaacttcccccatgcccgacatgctaatgccg
gaccctcgaatgtcaatgaagactcaacgctacctccccgaggaagcggcccactctgac
atctctgactgctccagcagagcagcttcctacaaggacccagaaaacaacaagcacctg
aaacccaaggacaatttaaaaaaaagacccgtgacttccaaatacccaagagactgtagt
gaggtggaactctcttacctaaaaacaaaacaggtcagcggtggaaccaaccaacttgtc
agaggagccggagagaaaatctacacgattgactccgaccgagaaatgagcttgcactcg
gaccccgtccactaccgggagagtcgtggtctcgccgccgatgaattggaataccctgaa
atatactctgaccacagtgataattatcgaaaatgcgatcaacccatcatccatctgaac
tcctccccgctgcaccacccggattccgatcttctgcccgacccgacgtacggcaaacac
tacaacatgaaagagaaaaacctttccccgcacgaatcaatcgatcgctacaaacagaca
cactgccgttcctgtttgtcaaaggttacgactgccggctaccctccaggagggacgttc
acccctacgggatccgccacggcttcttctacccgttccccgtataatcgatgcgaagca
tgtctccacacagccaatctgtacgacattagtgaggaccagcttcttgcagataccttg
gttagccccaccatgcaccaccaacaaccgcagcagcagcaacagcagcagcagcaaccc
gatgaaatgttcggtctgtattggccgcaaacggacggacctcatgtccagaagagaaac
cgcttgaggcttaatcgtcagcactcctttgacaacatattgctagaaaagcccaaggat
tcagatcagggccgaccagcgcgcagcgtcagcctcaaggagaaagatcgcttcctggac
tctacggctgattcgcattacgccaacctcttcagcatgcgtccctactccggcagactg
tttggcagcggatcccaatccatgatgtttaatcacaatctggaggagagcaaaaggagc
aagtccctgtacccggcccatggctcggaaaaccctttcctcagccactcgctgagggac
gacaccagcagcagactgatccacgggcgtagctcttccgatatttacaaacagctggcc
gtggcttcgccggcagcgattctcggagcagctcccatcaaaacatgcaacgacgcgaac
aatctccgttcttccgttaaatccaccacctcatactgctcacgggatgggcggatagct
aacgacatgtataagaaggagcatgtcatgccttacgctgccaataagacttgtgcgtac
ccagcctcacgcggcgtccttaactcagctcagctcagcaatagacgagtgtataaaaaa
atccccagtctggagtcagacgtttag
DBGET
integrated database retrieval system
