Syngnathus scovelli (Gulf pipefish): 125984202
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Entry
125984202 CDS
T08785
Name
(RefSeq) glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04020
Calcium signaling pathway
sscv04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
125984202
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
125984202
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125984202
Ion channels [BR:
sscv04040
]
Ligand-gated channels
Glutamate (ionotropic)
125984202
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
NMDAR2_C
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
125984202
NCBI-ProteinID:
XP_049602112
LinkDB
All DBs
Position
Unknown
AA seq
1389 aa
AA seq
DB search
MGVRLSASLWWPPPSLPLLLLLLASAAPRCSARPFGLPTPAVNVAVVFSGSAYQSEIKGR
LSRENFMDLPLEVNPITVLVNNTNPRALLTRICDTLAANRVHGVVFEDNVGSEAVAQILD
FISAQTGVPIVGISGGSAVVLPYKGEGSNFLQLGSSIEQQINGVFKVMEEYNWDSFVVVT
SLYPGYEAYVDYVKAYIDSSYFIWELQDVLNFDMSADSSNDVRARRLLQQIDAQVLLLYC
SHEEARYLFSMAAEAGLVGPGYIWILPSLAVGNPDVPPPDSFPVGLISIISDRWRLSLRK
RVRDGVAIVVKGVQSYRKQRGFLPEAHNDCHNPVKTSATNDTLFRHMLNVSWEQNDFSFN
ANGYLVNPAMNIITLDRERQWDKVGTYEMNILQMRYPVWPRYGSYLEPVSDYRHLTVATL
EERPFVIVEAVDPLTGTCVSNTVPCRRQSNKTETIVGHTEPYTKLCCKGFCIDILKKLSR
NIKFSYDLYLVTNGKHGKLVRGIWNGMIGEVFYKRADMAIGSLTINEERSEIIDFSVPFV
ETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAITVFVFEYCSPVGYNRSLV
TAKDPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANL
AAFMIQEQYIDTVSGLSDKKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPEMHSHMVKYN
QKGVEDALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDS
RWKRPIDLALLQFLADGDTQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAMG
LSLLVFAWEHLLYWKLRHSLPKSQRLDFLLAISRGIYSCFNGVEQTDRNGSIQSPDVTSN
YSQANMLKMLKTAKDMVSSARVENSLDSATKTLESWSRRGAAADNARAGLPPRVAADVAH
CRLPYVTSIADNHMPYPVRSRTPTFPIHYGDGAAQPLLDKARVITRPTPLRYTLPARNNL
LERTLPISSLSSPHLAMPDVSPSAQPHHAGRLYVENPVRHPASPFVTYREMQVPGIYVEH
RAPLRRKLSYPPDCGGRRRRSYVLESPDLRSRADYDEPRSCLAELRANQLMKSHTPCTTP
GHYPSTAASCNSCMKSYLEAEMDDVPLLGKDKLNRRASFLKATWGNERIRQVDETKPSTS
ASPRPADVPDLFPRVVVPAGAKPHKLYGSLGHNLSCYPLAAEPAYLDPAHMGSYPYKQKL
KYADPTRLPSYREAVLQNPAALRRSSSTLVHRHYSTYLNSYSDLPVYVTPPSQFYNSPKD
LCHLLPCATHCPDHGPARPVAYQNSVFGAERDEPLSAGRARRQVLVARRVNSPFVPKPWG
RVSSLESEV
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcgcttgagcgcctccttgtggtggcctccgccgtcgctgccgctgctgctg
ctgttgctcgctagcgccgccccccgctgctccgcccggcccttcgggctcccgacgccc
gccgtgaacgtggcggtggtcttcagtggctcggcttaccagtcagagatcaaggggcgg
ctgagccgtgagaacttcatggacctgcctctggaggtcaaccccatcactgtgctggtg
aacaacaccaacccccgagcgctgctcacccgcatctgcgacacgctggccgctaaccgc
gtccacggcgtggtctttgaggacaacgtaggctccgaggctgtggcccagatcctggac
ttcatctccgctcagaccggcgtgcccatcgtggggatcagcggaggctccgccgtcgtc
ttgccatacaagggcgagggttccaacttcctgcagctgggctcgtctatcgagcagcag
atcaacggcgtgttcaaggtgatggaggagtacaactgggacagctttgtggtggtcacc
agcctgtacccgggctacgaggcctacgtggactacgtcaaggcctacatcgacagcagc
tacttcatatgggagctgcaggacgtgctgaacttcgacatgtcggccgactcctccaac
gacgtgcgggcgcggcggctgctgcagcaaatcgacgcccaggtgctgctgctttactgt
tcccacgaggaggcccgctacctcttcagcatggcggccgaggccgggctggtggggccg
ggctacatctggattctccctagcctggcagtgggcaaccccgacgtgccgccgcccgac
agcttcccggtgggactcatcagcatcatcagcgaccgctggaggctgagcctgaggaag
cgggtacgcgatggcgtggccatcgtggtcaagggcgtgcagagctaccgcaagcagagg
ggttttttgcccgaggcccacaacgactgccacaatcccgtcaagacctccgccaccaac
gacacgctcttcagacacatgctgaacgtgagctgggagcagaacgacttctccttcaat
gccaacggttacctggtcaacccggcaatgaacatcatcactctggaccgggagaggcag
tgggacaaggtgggaacgtacgagatgaacatcctccagatgaggtacccagtgtggccc
cgctacggctcctacctggagcccgtgtctgactacaggcacctcacggtggccacgctg
gaggagcgtccctttgtcatcgtggaggccgtggacccgctgaccggaacctgcgtcagc
aacactgtgccgtgcagacgacagtccaacaagaccgaaaccatcgtgggccacacagag
ccgtacaccaaactgtgctgcaaaggcttctgcatcgacatcctcaagaagctgtcgcgc
aacatcaagttctcctacgacctctacctcgtcaccaacggcaagcacggcaagctggtg
cgcggcatctggaacggcatgatcggagaggtattctacaagcgtgcagacatggccatc
ggctcgctgaccatcaacgaagaacgctcggagattatcgacttctctgtgccgttcgtg
gagacgggcatcagtgtcatggtggccaggagtaacggcaccgtctcgccatctgccttt
ttagagccgtacagtccagccgtgtgggtgatgatgttcgtcatgtgcctcaccgtggtc
gccattaccgtcttcgtctttgaatactgcagtcctgtgggctacaaccgcagcctggtg
acggccaaagatcccggcggtcccaccttcaccatcggcaagtcagtgtggcttctttgg
ggaatcgtcttcaacaactcggtgcccatcgagaaccccaaaggcaccaccagcaagatc
atggtgctggtgtgggctttcttcgccgtcatcttcctggcgtcctacacggccaacctg
gccgccttcatgatccaggagcagtacatcgacactgtgtccgggctcagcgacaagaag
ttccagaagcctcaggagcagtaccctccgtttcgcttcggtacggtacccaacggcagc
acggagcgcaacatccgcagcaactaccctgagatgcactcgcacatggtcaagtacaac
cagaagggggtggaggatgccctcaacagcctcaagaccgggaaactggacgccttcatc
tacgacgccgctgtgctcaactacatggcgggaaaagacgagggctgcaaactggtcacc
atcggcagcggcaaagtcttcgccaccacaggctacggcatcgctctgcagaaggactcc
cgctggaagaggcccatcgacctggccctgttgcagttcttggccgatggtgacacccag
aagctgcagacggtgtggctgacgggcatctgccgcaacgagaagaaggaggtgatgagc
agcaagctggacatcgacaacatggcgggtgtcttctacatgctgctggtggccatgggc
ctcagtctgctggtcttcgcctgggagcatctgctctactggaagctgcgccactcgcta
ccaaagtcccagcgcctcgacttcctcctggcgatcagcaggggcatttacagctgcttc
aatggcgtggagcagacggatcgcaacggcagcatccagagccctgatgtcaccagcaac
tactcgcaggctaacatgctaaagatgctaaagacggcgaaggacatggtgtcgtccgcc
cgggtggagaactccctggacagcgccaccaagaccctggagagctggagccggcgaggg
gcggcggcagacaacgcccgggccggcctcccgccccgcgtggccgccgacgtggcacac
tgccgcctgccctatgtgaccagcatcgctgacaaccacatgccctacccggtgaggagc
cgcaccccaaccttccccatccactacggggatggcgccgcccagcccctcctggacaaa
gcgagggtgatcacgcgacccacaccactgcgctacacgctccctgcccgcaacaacctc
ctggagaggacgctgcccatctccagcctcagcagcccccacctcgccatgcccgacgtg
tcgcccagcgcccagccccatcacgccggccggctctatgtggagaacccggtgcgccac
ccagcatcacctttcgtcacctaccgggaaatgcaggttcccggcatctatgtggagcat
cgagcccccctgaggaggaagctgagctacccgcctgactgcgggggccgcaggagacgc
agctacgtgctcgagtcccccgacctgaggtcgagggccgactacgacgagccgcgatcc
tgcctggccgagctcagagccaaccagctgatgaaaagccacaccccttgcaccaccccg
ggacactacccgagtacagccgccagctgcaactcctgcatgaagtcgtacctggaagcc
gagatggacgacgtccccctgctgggcaaggacaaactcaaccgcagagcctctttcctt
aaagctacctggggcaacgagcgcatccggcaggtggacgaaactaagccgtccacctcc
gcctcgccccgccccgccgacgtgcccgacctattcccgcgggtggtggtgccggccggc
gccaagccccacaagttgtacggcagcctgggacacaatctgtcctgctacccgctggcc
gccgagcctgcctacttggacccggcccacatgggctcatacccttacaagcagaaactc
aagtacgccgaccccactcggctaccgtcgtaccgggaggccgtcttgcagaaccctgcc
gccctgcgccgctcctcatccacattggtgcacagacactactccacctacctgaactct
tactcggacctgccggtgtacgtcacgccgccgagccagttctacaacagccccaaagac
ctgtgccacctgttgccgtgcgccacccactgtccggaccacggccccgcccggcccgtg
gcctaccagaacagtgtgttcggggccgagcgggacgagcccctctcggctggcagggca
cgtcggcaggtgttggtggcgcgccgggtcaacagtccgtttgtgccaaaaccctggggg
agggtctccagcctggagtcagaggtgtga
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