Syngnathus scovelli (Gulf pipefish): 125988233
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Entry
125988233 CDS
T08785
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03020
RNA polymerase
sscv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125988233
09124 Replication and repair
03420 Nucleotide excision repair
125988233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125988233
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125988233
Enzymes [BR:
sscv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125988233
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125988233
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125988233
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
125988233
NCBI-ProteinID:
XP_049609107
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVMRCVCFFCSKLLVDAN
NPKIKDILGKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPGIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGMDPKF
SRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNNDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DVTRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNMATLKPSNKTFEKKFKFDCTNERALRRTLQEDVVKDVMTNAHVQGTLEKEFEKMKED
RENLRTIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPIRVVEGVEELSKKLVI
VNGEDRLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLTTEAFDWLLGEIETKFNHSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
KSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGRSPAMTPWNTGATPAHGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASHKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgccccttgcgcacgatcaagagagttcag
ttcggcatcatcagccctgatgagcttaaacgaatgtcggttacagaagggggtatcaaa
taccccgaaacgacagaaggcggtcgtcccaaacttggtggcctcatggacccgagacaa
ggtgtcatcgagcgaagtggaagatgtcagacgtgtgcaggcaacatgactgaatgcccg
ggacactttgggcacattgaactggcaaagcccgtcttccacgtgggctttatttccaag
ataatgaaggttatgcgttgcgtctgcttcttttgttccaagctactcgtggatgccaac
aatccaaagattaaggacatccttggcaaatccaaagggcaacccaggaagcgcttgacg
cacgtgtacgagctgtgcaaaggcaaaaatatctgcgaaggaggcgaggagatggataac
aaattcgggatggaacagcaggagacggaggaggacatcacgaaggagaagggacacggc
ggctgcgggcgctaccagcctggaatccgccgctccggcctggagctgtacgccgagtgg
aagcacgtgaacgaggactcgcaggagaagaaaatcctgctgagccctgaacgcgtgcac
gagatcttcaaacgcatctcggatgaggaggacgtcatcctgggcatggatcccaaattt
tcccgacccgagtggatgattgttaccgtgctgcccgtgccgccgctcgccgtcaggccc
gccgtagtcatgcagggctccgctcggaaccaggacgacttgacccacaagttggccgat
atcgtgaaaatcaacaaccagctgaggcgaaacgagcaaagcggcgcggcggctcacgtc
atagcggaggatgtcaaattgctccagttccacgtggccaccatggtggacaacgaactg
ccgggcctgcccagagccatgcagaaatccggccgccctctcaaatccatcaaacagcgt
ctgaagggcaaggaaggccgagtacgaggcaacttgatgggcaaacgcgtggacttctcg
gcgcgaaccgtcatcaccccggatcccaacctccaaatcgaccaagtgggcgtcccgcga
tccatcgccgccaatatgaccttcccggaaatcgtcacacccttcaacaacgacagactt
caggagctggtgcggcgaggcaacagccagtacccgggagccaaatacatcatccgcgac
aacggcgacagaattgacctgcgatttcaccccaaaccgagcgaccttcacttgcagatc
ggctacaaggtggaaagacacatgtgcgacggagacatcatcatctttaacagacagccc
acgctgcataaaatgtccatgatgggtcacagggttcggattctgccctggtccacattt
cgactcaacctaagcgtcaccacgccttacaatgccgatttcgacggcgacgagatgaac
ctgcacctgccgcagtccctggagaccagggccgagatccaagagctggccatggtgccg
cgtatgatcgtcacgccacagtccaacaggcccgtcatgggcatcgtgcaggacacgctg
acggccgtacgcaagttcaccaagagggacgtcttcttggagcggggcgaagtcatgaac
ctgctcatgttcctgtccacctgggacgggaaggtaccccagccggccatccttaagccc
cgcccgctctggaccggcaagcagatcttcagcctgatcattcccggccacatcaacgtc
atccgcacgcacagcactcacccggacgacgaagacagcggcccttacaaacacatctcg
cccggcgacaccaaggtcatcgttgagaacggcgagttgatcatgggcatcctgtgcaag
aagtctctgggaacgtcagccggttccctggtccacatttcctacctggagatgggccat
gacgtcaccaggctcttctactccaacatccagacggtggtcaacaactggctgctcatc
gaaggacattccatcggtatcggcgactccatcgccgacgccaagacttacctcgacatc
cagaacacaatcaagaaagccaaacaggatgtgatcgaagtcatcgagaaggcccacaac
aacgagctggagcccacccccggcaacacgctcaggcagacctttgagaaccaggtcaat
cggatcctcaacgacgcccgtgacaaaacgggctcctcggctcagaagtcgctgtctgag
tacaataacttcaagtccatggtggtggccggatccaagggctccaagatcaacatctcg
caggtcatcgccgtggtggggcagcagaacgtggagggcaaacggatcccgtttggcttc
aagcaccgcacgctgcctcacttcatcaaggacgattacggtcccgagagcagaggcttt
gtggagaactcctacctggccggcctgacgcccaccgagttcttcttccacgccatggga
ggccgagagggtctgatcgacacggccgtcaagacggccgagacgggttacatccagcgg
cgtctaatcaagtccatggagtcggtcatggtcaagtacgacggcacggtgcgaaactcc
atcaaccaggtggtgcagctgcgttacggcgaggacggcctggcgggagagaacgtggag
ttccaaaacatggccaccctcaaaccctcaaacaaaaccttcgaaaagaagttcaagttt
gactgcaccaacgagcgagcgctgaggcgaacgctgcaggaggacgtcgtcaaagacgtg
atgaccaacgcccacgtgcaaggcacactggagaaggaatttgagaagatgaaggaggac
agggaaaacctccgaacgattttccccaccggcgacagcaaggtggtgctgccgtgcaac
ttggccagaatgatttggaacgcccagaagatctttcgcatcaacacgcggactccgacg
gacctcaacccgatccgagttgtcgaaggcgtggaggagctgagtaagaaactggtgatc
gtcaacggcgaagaccgtctcagcaggcaggcccaagagaacgccacgcttctcttcaac
atccaccttcgctccacgctgtgctccaagcgcatgacggaggagttccgcctcaccacc
gaggctttcgactggctgctgggagagatcgagaccaaattcaaccattccatcgcccat
cctggtgaaatggtgggcgctctggccgctcagtctctgggagaaccggccacgcagatg
accttgaacaccttccactatgccggcgtgtcggccaagaacgtgacactgggcgtgccc
cgtctgaaagagttgatcaacatttccaagaagcccaaaacgccctcgctgacggtcttc
ttactgggccaggccgccagggatgccgagagggccaaagacatcctgtgtcgcctggag
cacaccacgctgagaaaggtgaccgccaacacggccatctactacgaccccaacccccag
aatacggtggtggccgaggaccaggagtgggtcaacgtgtactacgagatgccggacttt
gacgtgacgcgcatttccccgtggctgctgcgcatcgagctggaccgcaagcacatgacg
gatcgcaagctgaccatggagcagattgccgagaagatcaacgcaggtttcggcgacgac
ctgaactgcatcttcaacgacgacaacgccgagaagctcgttttgcggatccgaatcatg
aagagcgacgagaacaagttccaagaggacgaggaggtggtggacaaaatggacgacgac
gtcttcctaaggtgcatcgagtccaacatgctgacggacatgacgctccaaggcatcgag
cagatcagcaaggtgtacatgcacctgcctcagacggacaacaagaagaagatcatcatc
accgaggacggcgaattcaaagcgctgcaggagtggatcctggagacggacggcgttagc
ctcatgagggtcttgagcgagaaggacgtcgatcccgtcaggaccacgtccaacgacatc
gtggagatcttcacggtgctcgggatcgaggcggtgcggaaggcgctggagagggagctg
taccacgtcatctcctttgacggttcctacgtcaactaccgccacttggccctgctgtgc
gacaccatgacgtgccgcggtcacctgatggccatcacgagacacggcatcaaccggcag
gacacgggaccgctcatgaagtgttcctttgaggagacggtggatgtgttgatggaggcg
tcgtcccacggcgaaagcgacccgatgaagggcgtgtccgaaaacatcatgctgggccag
ctggctcccgccggcacgggttgctttgacctgctcctggatgccgaaaagtgcaagtac
ggcatggagatcccgacaaacatacccggcatcagcgtcgctggccccaccgggatgttc
tttggctcggtgccgagtcccatgagcggccgctctcccgccatgacgccttggaacaca
ggagcaacacccgcccatggcgcctggtctcccagtgttggaagcggcatgacccccggg
gcagccggcttctccccgagcgcagcgtcagacgccagtggcttctctccaggctattcc
ccggcttggtcgcccactcccgggtcccccggatcccccggacccgccagtccttacatc
ccatctccaggtggcgccatgtcgcccaattactcgcccacttcgcccgcctacgagccc
cgctcccccggcggctacacgccccagagtccgggctactcgccgacgtcgccttcctat
tccccgacgtcaccctcgtactcccctaccagccccaattacagtccgacgtcaccctcc
tactcccccacctcgcccagttattcccccacgtctccctcttactccccgacgtcgcct
tcctactcgccgacgtctccctcctattcgcccacctcgccgtcttactcgccgacatct
ccctcctactcgccaacgtcgcccagctacagtcccacttcgcccagctacagcccgaca
tcgccgagctactcccccacgtctccttcgtactcacccacctctccctcttattctcct
acctcgccgtcgtattcgcccacctcgccgtcttactcacccacgtctccctcctactcg
ccgacgagcccgagttacagccccacgtcgcccaactacacccccacctcacccagctac
tccccgacatctccctcctactccccaacctccccctcctactcgccgacctcgcccaac
tacacacccaccagccccaactactcccccacctccccctcgtactctccgacctcaccg
tcctactcgccctccagcccccgctacaccccgcagtcgcccacctacacgcccagctcc
ccctcatacagccccagctcgccctcctactcacccacctcgcccaaatacaccccgact
tcgccgtcgtacagtcctagctcgccagagtacacccccgcctcacacaaatactcccca
acgtcacccaagtactcccccacctcgcccaagtattccccaacctcccctacttattct
ccgacgacgcccaaatacagccccacctcgcccacctactcgcccacctccccgacttac
acacccaccagccctaaatactcccccacctcgccgacgtactcgccgacgtcgcccaag
tactcgccgacgtcgcccacgtactcgccgaccagccccaaaggctccacgtacagcccc
acctcgcccggatacagccccacctcgcccacctacagcccggccatcagcccggacgac
agcgacgaggaaaacaactga
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integrated database retrieval system
