Syngnathus scovelli (Gulf pipefish): 125993785
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Entry
125993785 CDS
T08785
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1b isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04020
Calcium signaling pathway
sscv04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
125993785
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
125993785
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125993785
Ion channels [BR:
sscv04040
]
Ligand-gated channels
Glutamate (ionotropic)
125993785
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
SIP
Cas_APE2256
DUF6724
Toprim_2
Motif
Other DBs
NCBI-GeneID:
125993785
NCBI-ProteinID:
XP_049618631
LinkDB
All DBs
Position
Unknown
AA seq
905 aa
AA seq
DB search
MEVRASLLLLALHCGAVALCGCEPRVVNVGAVLSQKRYEEVFREAVAHANAAYGRDRFKM
NAIAVTHKANAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVG
LTTRMSIYSDKSIHLSFLRTVPPYSHQASVWFDLMREFRWNHIILIVSDDHEGRAAQKRL
ETLLEEKETKTKIRNYENMEHHGFDFRRTPKAEKVLLFGPDTNLTALLMDAKDLEARVII
LSASEDEAAGVYKAARQLNMTGSGYVWIVGEREMSGKALNEAPDGLLGLQLINGKNESAH
IRDAVGVVAQSLQELLDKENITEPPRGCVGNTNIWRTGPLFKRVLMSSKYAEGLTGRIEF
NDDGDRRFATYNILNYQQKPGRLVQVGIFNGSQVVMNPQRKIIWPGGETEKPVGYQMSTK
LKIVTIHQEPFVYVKPTKADGTCTEEYTVNGVLIKKVICTGPNGTIPGQPTVPQCCYGFC
IDLLIKLAMSMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTI
NNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYL
LDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGF
AMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVEL
STMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFG
IGMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFML
VAGGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQPYPTDITGQINLTDPS
VSTVV
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgcgcgcgtcactgctgctgctggcgctacactgcggcgcggtggcgctgtgt
ggctgcgagccgcgcgtggtcaacgtgggcgccgtcttgagccagaagcgctacgaggag
gtgttccgcgaggcagtggcacatgccaacgccgcttacggccgcgaccgcttcaagatg
aacgccatcgccgtcacgcacaaggccaacgccatccaaatggcgctctctgtctgcgag
gacctcatctccaaccaggtgtacgccatcttggtgagccacccgcctcagtctaacgac
cacctgacgccgacgcccgtgtcctacactgctggcttctaccgcatccccgtggtgggc
ctgaccacgcgcatgtccatctactccgacaagagcatccacctgtccttcctgcggacg
gtgcccccgtactcgcaccaggccagcgtctggttcgacctgatgcgagagttccgctgg
aaccacatcatcctcattgtcagcgacgaccacgaaggacgggccgcgcagaagaggctg
gaaacgctcctggaggagaaggagaccaagactaaaatcaggaactatgaaaacatggag
catcacggctttgacttccggagaacgcctaaggctgagaaggttctgctgtttggtccg
gacaccaacctcactgccctgctcatggacgccaaagacctggaggctcgcgtcatcatc
ctctctgccagcgaggacgaagcggcgggcgtttacaaggcggcccgtcaactcaacatg
accggttccggttacgtctggatcgtcggagagagagaaatgagcggaaaagctttgaat
gaggcaccggacggcctgctgggtctgcagctgattaacggtaagaacgagtcggcgcac
atcagggacgccgtgggagtggtggcacagtccctgcaggagcttctggacaaggagaac
atcacggaacctccgcgtgggtgcgtgggcaacaccaatatctggaggaccggacccctg
ttcaaaagggtgctgatgtcctcaaagtacgccgagggcctgaccggtcgcatcgagttc
aacgacgacggcgaccgacgcttcgccacttacaacatcctcaactatcagcagaagccc
ggcagattggtgcaggtcggcatcttcaacggatcgcaggtggtgatgaacccgcaaagg
aagatcatctggcccggcggtgaaacggaaaagccggtcggctaccagatgtcgaccaaa
ctcaagatcgtgaccatccaccaagagccctttgtctacgtgaagcccacaaaagcggat
ggaacatgtacagaggaatacacagtcaacggagtcctcatcaaaaaggttatctgcacc
ggacccaacggcaccatcccaggtcagccgacggttcctcagtgttgttacggcttctgc
atcgacctcctcatcaagttggccatgagtatgaacttcacgtatgaggttcacctggtg
gcggacgggaaatttggaacgcaagagagggtgaacaacagcaacaagaaggagtggaac
ggcatgatgggcgagctgctgggcgggttggctgacatgatcgtggcccccctcaccatc
aacaacgagcgcgctcagtacattgagttctccaagcccttcaagtaccagggcctcacc
attctagtcaagaaggaaatccctcgcagcacgctggactccttcatgcagcctttccag
agcaccttgtggctccttgtcggcctgtcggtccacgtggtggcagtgatgctctaccta
ttagaccgattcagcccttttggaaggttcaaagtcaacagcgaagaagaagaagaagac
gccctcaccttgtcgtcggccatgtggttctcctggggagtccttctcaattccgggatt
ggtgaaggagccccgaggagtttttcggccaggatcctgggaatggtgtgggcgggcttc
gccatgatcatcgtggcgtcgtacacggccaatctggccgccttcctggtgctggaccgg
cctgaggagcgcatcactggcatcaacgaccccaggctgcggaacccgtcggacaagttc
atctacgcgacggtgaaacagagttctgtggacatttacttccggcgccaagtggagctg
agcaccatgtaccggcacatggagaagcacaactacgagagcgccgccgaggccatccag
gccgttcgagacaacaagctgcacgccttcatctgggatagcgccgtgctggagttcgag
gcctcacagaagtgcgacctggtgaccaccggagagcttttcttccgctcgggcttcggc
atcgggatgaggaaggatagcccctggaagcagaacgtgtcgctcgccatccttagttct
cacgagaacggcttcatggaggacctggacaagacgtgggttcgctaccaggagtgcgac
tccaggagcaacgcgcccgccacgctcacctttgaaaatatggcaggcgtattcatgctg
gtggcggggggcatcgtggcaggcatcttcctcatcttcatcgagatcgcctacaagcgc
cacaaggacgcccgtcgcaagcagatgcagttggcgtttgccgccgtcaacgtctggagg
aagaacctgcagccgtacccgaccgacatcactggacagatcaacctgacggatccgtcc
gtcagcaccgtggtctga
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