Shewanella sediminis: Ssed_3324
Help
Entry
Ssed_3324 CDS
T00596
Name
(GenBank) thiamine biosynthesis/tRNA modification protein ThiI
KO
K03151
tRNA uracil 4-sulfurtransferase [EC:
2.8.1.4
]
Organism
sse
Shewanella sediminis
Pathway
sse00730
Thiamine metabolism
sse01100
Metabolic pathways
sse01240
Biosynthesis of cofactors
sse04122
Sulfur relay system
Module
sse_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
Ssed_3324
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
Ssed_3324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sse03016
]
Ssed_3324
Enzymes [BR:
sse01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.4 tRNA uracil 4-sulfurtransferase
Ssed_3324
Transfer RNA biogenesis [BR:
sse03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
Ssed_3324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiI
THUMP
Rhodanese
QueC
Motif
Other DBs
NCBI-ProteinID:
ABV37928
UniProt:
A8FYK5
LinkDB
All DBs
Position
complement(4040090..4041544)
Genome browser
AA seq
484 aa
AA seq
DB search
MKFIVKLFPEIMMKSKPVRMRFTKMLETNIRNVLKKVDESAKVKREWDKIMVLVPSDRPD
LVEAFADRLSCIPGIAHVLQVNESTFESVDDIYQQTLALYKEQLVGKTFCVRVKRVGNHD
FKSIEVERYVGGGLNQFTEATGVKLKNPDMTINLEIDRENLYLVVNRIQGLGGYPMATQE
DVLSLISGGFDSGVSSYQFIKRGSRTHYCFFNLGGDQHEIGVKQVAYHLWQKYGESHKVK
FISVPFDPVVTEILEKIDNGQMGVILKRMMMRTAARLADKMGIQALVTGEAMGQVSSQTL
TNLNVIDRCTEQLILRPLIAMDKQDIINLSRKIGTEDFSKSIPEYCGVISQKPTVKAVLS
KIEAEEQKFSDDLIERVLETAEIIDIREIATSMDTKITETETVGDVNSNEVIIDVRAPEE
EEKDPLKLEGIEIKTIPFFKLATQFADLDKAKTYLLYCDRGVMSKLQALYLQEQGYENVK
VYRP
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttatcgtaaaactatttcctgaaatcatgatgaagagcaagccggtaagaatg
cgttttaccaagatgcttgaaaccaatatccgaaatgtgcttaaaaaagtggatgagtct
gccaaggttaagcgtgagtgggataagatcatggtgttggttccaagcgatagacccgac
ttggttgaggcttttgccgaccgtttatcttgtattccgggtattgcacacgtacttcaa
gtcaacgaaagcacctttgaatctgttgatgacatctatcagcaaaccttagctctgtat
aaagaacaactcgttggaaagacgttttgtgtgcgtgtaaagcgtgtgggtaaccatgac
tttaagtcgatcgaagttgaacgctatgttggtggtggtttaaatcaattcactgaggct
accggtgttaaactaaaaaatcccgatatgaccatcaacttagagatagacagagaaaat
ctctatctggttgttaatcgtattcaagggctgggtggttaccctatggcgactcaggaa
gatgtactgtctcttatctcgggtggttttgactcgggcgtttccagttaccagtttatt
aaacgtggctccagaactcactattgtttctttaacttaggtggcgatcaacatgagatt
ggtgttaagcaggtagcgtatcatctgtggcagaaatacggtgagtctcataaggttaag
tttatctctgtgccttttgacccggtcgttaccgagattctggagaaaattgataatggt
caaatgggagttatccttaagcgtatgatgatgcgcacggcggcaagattggctgacaaa
atggggatccaggcgctggtaaccggtgaagccatggggcaagtgtccagccaaacatta
acgaatttgaatgttatcgatcgttgcaccgaacagttaatattacgcccgctgattgcg
atggataagcaagatattattaacctgagtcgtaagataggtaccgaagatttttctaaa
tcgattcctgaatattgtggggttatctcgcaaaaaccaacggttaaagcggtactttca
aaaattgaagccgaagagcaaaagttctctgacgatcttattgaacgtgtcctggaaact
gccgaaatcatcgatatcagagagatagcaaccagcatggatacaaagataacagaaact
gaaacggttggtgacgtcaactctaatgaagttatcattgatgtcagagcaccggaagag
gaggagaaagatcctctgaagcttgaaggtattgagattaaaacgattccgttttttaag
cttgcaactcaatttgcggatctggataaagctaaaacctatctgctgtattgcgatcgc
ggcgtgatgagtaaattacaggccctatacctgcaagagcagggttatgagaacgtgaag
gtgtatcgtccttaa
DBGET
integrated database retrieval system
