Solea senegalensis (Senegalese sole): 122778940
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Entry
122778940 CDS
T07721
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122778940 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122778940 (clp1)
Enzymes [BR:
ssen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
122778940 (clp1)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122778940 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
MMR_HSR1
ATP_bind_1
TniB
AAA_22
AAA_18
Sigma54_activat
AAA_16
Motif
Other DBs
NCBI-GeneID:
122778940
NCBI-ProteinID:
XP_043897041
LinkDB
All DBs
Position
LG12:8419690..8423009
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AA seq
441 aa
AA seq
DB search
MATEGVEKVSEDAPATGKVSTRFDLEKETELRFEVEAGEAVEQVDLELLTGMAEVFGSEL
NRNKKYVFGAGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
ENERGPRVMVVGPTDVGKSTVCRLLLNYSVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASAFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDTRDEKIREYFYGFRGLSFYPFSYEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSAEDGEEGARKGIVESPVCGFIVVTNVDTQAQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgagggtgtggaaaaagtgagtgaagatgctccagcaaccgggaaggtcagc
accagatttgacctggagaaagagacggaacttaggtttgaggtggaggcaggagaagca
gtagaacaagttgacctggagctcctcacaggaatggctgaagtgtttgggtcagagcta
aaccgcaacaaaaagtacgtatttggagcgggctcaaagattgcagttttcacctggcaa
ggctgcagtgtcaacctttatggaaaaccagaggtggcttatgtgtccaaggatactccc
atgctgctttatctgaacacacatgctgcgctggaacagatgaggaaacaagcagagcgt
gagaatgagcgggggccaagggtgatggtagtgggacccacagacgtggggaagtcaaca
gtgtgtcgactgctgttaaattattctgtaagggtgggcaggaggccaacactagtggaa
ctggatgtgggacagagtggggtgtctgtacctgggacagtgtctgcactgtgcatcgag
cgtccagcagatgtggaggagggtttctcagtccaggctcctttggtctaccactttggc
tctactaccccaggaaccaacatcaaactttacaacaagctgacgtcatgcttagccgag
gtgttttcccagcgctgtgaggtgaacaggaaggctagtgtgggaggatgtatcattaac
acctgtggctgggtgaaaggctctggataccaggctctggtccattgtgcctctgccttt
caggtggatgtggtgcttgtgctggatcacgagaggctgtacaatgaactcaaacgtgac
ctccctcactttgtgcgggttgtgcttctacccaagtccgggggggtggtggagcggtcc
aaagagtgccggcgggacacccgggatgagaagatccgagagtatttctatggcttccga
ggactgtccttctaccctttttcctatgaggttcgtttctcggatgttcgaatctataag
attggcgcaccgtccatcccagactcatgcttgccactaggaatgtctcaggatgacaca
caactaaagctggtgcctgtgacaccaggaagagacctcacatatcatgtgctaagtgtg
agcagtgctgaggacggagaggaaggggctagaaagggcatcgtggagagtcctgtgtgt
ggctttattgtagtgacaaatgtggacacacaagctcaggtaatgaaagtgctgtcccca
gcacccagaccactgcccagacacactctgcttatcatggacatccgtttcatggacatg
aaataa
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