Salvia splendens (scarlet sage): 121744402
Help
Entry
121744402 CDS
T07627
Name
(RefSeq) DNA mismatch repair protein MSH6-like isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121744402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121744402
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121744402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
AAA_29
Motif
Other DBs
NCBI-GeneID:
121744402
NCBI-ProteinID:
XP_041993859
LinkDB
All DBs
Position
8:complement(6431658..6439462)
Genome browser
AA seq
1305 aa
AA seq
DB search
MAPSKKATNGRSPLVNQQRQITAFFGKSPSGSSPAPSESPSPSLSKLNPNPKVGPPPSQS
PITPSPLNSKRKKPLLVITPNFGASSAEKPTLEKKSYGAEVIDRRVRVYWPLDKSWYEGV
VKSFDEASGKHLVQYDDAEEESLNLSGEKVELIEEPVKKKLRRLRRFSVVEDDDDEEEDE
PDLKELEDDSDDEDWEENAGNGILEDEDCLEDSELEEEGSGGAEDRKNTSFRKRKGGEGE
VVAGKKGKIAEELKSCFSKVSPSGKAENLIEPISRTSTYSVKASDTTKERSLSLTASLLD
SPSMVDTAERFAKRESEKLHFLELDRRDANRRRPGDEKYDHRTLYLPPNFVKNLTGGQRQ
WWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELGLQYMKGDQPHCGFPEKNFTINVEK
LARKGYRVLVVEQTETPEQLGIRRKESGSKDKVVKREICAVVTKGTLTEGESFTTNPDAS
YIIAVTESCQISASEQGIHIFGICAVDVATSKIILGQFRDDADCSSLCCLLSELRPVEII
QPAKLLCTETEKALFRHTRNPLVNELVPFSEFWDADKAISEVTSIYQRLGGHSHSSSENN
DSSRENDGRNCLPEVLSNLISEGENGSQALSALGATLFYLRQAFLDESLLRFSKFDLLPC
SGLGEIAQKPYMVLDAAAMENLEIFENSRNGESSGTLYAQLNHCATAFGKRLLRTWLARP
LYHLKSIKERQDAIAELRGVNQPNVLSFRKELSKLPDMERLLARIFAGSEASGRNANKVV
LYEDASKKKLQEFISVLRGCEMMTNSCSAVGAILENVESTLLRHLLIPGSGIPDVNPILR
HFMDAFDWEEAYQSGRIIPREGADLDYDAACQVVKDIESSLKKHLKEQQKLLGDPSICYV
TIGKDAYLLEMPESLTQAIPKEFELRSSKKGFVRYWSPVIKDLIGELSRAESEKESKLKS
ILQRLIERFCENHIKWRQFISTVAELDVLISLSIASDYYEGRSCRPVIASANPDEVPFLR
AKNLGHPVLRSDSLGEGTFVTNDVTLGGSGNSSFILLTGPNMGGKSTLLRQVCMAVILAQ
MGADVPAESFALNPFDRIFVRMGAKDQIMGGQSTFLTELLETAAMLTSATRSSLVALDEL
GRGTSTSDGQAIAAAVLEHFVHTVQCRGMFSTHYHRLAVDYKSDPKVSLRHMACQVGKGA
GDLEEVIFLYKLTPGACPKSYGVNVARLAGLPDTVLRKAAAMSQEFEGTYGNKLVSTHRW
EDKASFIIENLIKIAATTNYHTLAESKNIGLLTSLQSRASLLLQQ
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgtcgaagaaggccaccaacgggcgctcgccgctagtcaatcaacagcgtcag
atcaccgctttcttcggcaagagcccgtcgggatcatctccggctccttcagaatcgccc
tctccatctctctccaagctaaaccctaaccctaaagtgggcccgcctccaagccagagt
cccatcactccttcacctctcaattccaagcgtaagaagcccctcctagttatcaccccc
aatttcggcgcctcttcggctgagaaacctaccttggagaagaaatcgtacggggcggaa
gttattgacagaagggtcagggtttattggccgctggataagtcgtggtacgagggcgtt
gtaaagtcgtttgatgaggcatctgggaagcatttggttcagtatgacgatgccgaagag
gaaagtctgaatctttcgggggaaaaggttgagttgattgaggagccggtgaagaagaag
cttcggaggttaagaaggttttcagtagtggaagatgatgacgacgaggaggaggatgag
cctgatctcaaagagctagaagatgattcggatgatgaggactgggaggaaaatgcaggg
aatggaatattggaagatgaggattgtttggaggattcggagttggaggaagaggggagt
ggtggagctgaagataggaaaaatacgagcttcaggaaacggaaagggggcgaaggagaa
gtcgttgctggtaaaaagggaaaaattgctgaggagttgaagagttgcttttcgaaggtt
tctccttcaggaaaggctgagaatctgatcgaacctattagcagaactagtacttatagt
gtaaaggcatctgatacaaccaaagaacgctctctttctctaacagcatcccttctggat
agcccttcaatggtagacacggcagaaagatttgccaaacgtgaatcagagaaattgcac
ttccttgagttagatcgtagagatgccaaccggaggcgccctggggatgagaaatatgat
catagaaccttatacttgcctccaaactttgtgaagaatttaacgggtggccagcggcaa
tggtgggagtttaagtcgaagcatatggacaaagttctctttttcaagatgggcaagttt
tatgaactttttgaaatggatgcacatgttggagccaaagaacttggcttgcagtacatg
aagggagaccaacctcactgtggatttccagagaagaacttcacaatcaatgtagagaag
ctggcaagaaagggttatcgagttcttgttgtggagcaaacagagacacctgaacagctt
ggcattcgtcgaaaagaaagtggctccaaggataaggttgtcaaacgcgagatatgtgct
gttgtgactaaaggaactttaaccgagggagaaagttttacaacaaaccccgatgcttca
tatataattgctgtgacggaaagctgccaaatttcagcaagtgaacaagggatccacatt
tttggtatctgtgctgttgatgtggctacaagcaagattattcttgggcagttcagggat
gatgctgattgcagttcgctttgctgtttattatctgaattaaggccagtggaaattatt
caaccggctaagttgctgtgtactgagactgaaaaggcactatttaggcatacacgaaat
cccctggttaatgagctggttcctttctctgaattttgggatgctgataaagctatttct
gaagttacaagcatttatcagcgccttggtggtcattcccatagttcatcagaaaataat
gattcttcaagggagaatgatggtagaaactgcctaccagaagtgctatccaacctcata
agtgagggtgaaaatggaagccaagcactatcagcacttggtgcaactcttttctattta
aggcaggcattccttgacgagtctctcctcagattttctaaatttgatctgctcccatgc
tctggtcttggggaaattgcccaaaagccatacatggttcttgatgctgctgccatggaa
aaccttgagatatttgaaaatagcagaaatggagaatcttctgggacattatatgctcaa
ttaaaccattgtgccacagcatttggtaaaaggctactgaggacatggctagccagacct
ttgtatcatctcaagtcaattaaggagcgacaggatgctatagcagaactgaggggagtt
aatcaacctaatgtgcttagcttcagaaaggagctatcgaaactacctgacatggaacgc
ttgcttgcacggatatttgctggcagtgaagctagtggcaggaatgcaaataaagttgtt
ctctatgaggatgcatcaaaaaagaagcttcaagagttcatttcagttcttcgtggatgt
gaaatgatgaccaattcgtgctctgcagttggggctattttagagaatgtggagtctaca
ctactacgtcatctattaattcctggttcagggattcccgatgtcaatccaattttgagg
catttcatggatgcctttgattgggaggaggcatatcaatcagggcgcatcatacctcga
gaaggagctgatcttgattatgatgctgcatgccaagttgttaaagacattgaatccagt
ctcaaaaaacatctaaaggagcagcagaaattacttggagatccatccatctgttatgta
acaattggaaaagatgcgtaccttttggaaatgcctgagagtttgacacaggcgattccg
aaggaatttgagttacgatcatctaagaagggttttgtccgatactggtccccagtgata
aaagatttaataggagagctttcacgagctgaatctgagaaggagtcaaaattgaagagc
attcttcagaggttaatagaacgattttgtgagaatcacattaaatggaggcaattcatc
tctactgttgcagagctggatgtcttaatcagcttatcaattgcaagtgattattatgaa
gggagaagttgtcgtccagttatagcttcagcgaatcctgatgaagtgccattcctcagg
gcaaaaaacttagggcaccctgttttaaggagtgattccctcggagagggcacctttgtc
accaatgatgtcactttaggtggttctggtaactccagctttatactgcttaccggtcct
aacatgggtggaaagtctactcttctacgccaagtttgcatggctgtaattttggcccag
atgggagctgatgtacccgcagaaagttttgctttgaatccttttgaccgtatatttgtt
cgaatgggtgctaaagatcagattatgggtggtcaaagcacatttctgacagagcttctg
gaaactgcagccatgctgacatcagcaacgcgcagctcacttgtggcactggacgagctg
ggacgaggaacttccacatcagatgggcaggccattgctgcagcagtgctcgaacatttt
gttcacacagtgcaatgccggggaatgttttctactcattatcatagattagctgttgac
tacaagagtgatcctaaggtctccctccgtcatatggcttgccaagtcggaaaaggagcc
ggagatcttgaggaagtaatcttcctttacaaattgacacctggcgcatgccctaaaagt
tatggtgttaatgttgctcggttagcaggacttcctgatacagttctacgaaaagctgca
gcaatgtctcaggagtttgaaggaacttatggcaacaaattagtatccactcataggtgg
gaagacaaagcatcatttatcatcgaaaacttgataaagatcgcagctactacaaactac
cacactctcgctgaaagcaagaatattggcttgttaactagcctgcagtcgagagcgagt
ttacttctacaacaatag
DBGET
integrated database retrieval system
