Salvia splendens (scarlet sage): 121751869
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Entry
121751869 CDS
T07627
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121751869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121751869
Enzymes [BR:
sspl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121751869
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
121751869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2635
Motif
Other DBs
NCBI-GeneID:
121751869
NCBI-ProteinID:
XP_042002594
LinkDB
All DBs
Position
10:complement(21266473..21277054)
Genome browser
AA seq
1688 aa
AA seq
DB search
MAATEMVRSVRFGFMTDKEVRKQSLVKITNPNLLDTLDKPIPGGLYDLAMGPLVDGAECK
SCGQQSFNCSGHCGHIELVSPAYNPLLVKMLSNILNKACFYCFHFRSSKAEAENCVSQLE
RIKEGNIVAAKKLSLRQKVIDKKKMDWADVDDVVDPEDSQGSNVSHSGVDSDVENNHKHE
KEAFWDSTLLTESMSVLNEFLKAKEKKCKNCKRSNPKITKPTFGWFHVKGISSTQLRANA
ILSSGLDVTHSGGGEDRPSSEVLNASDCSWKDGSDTAEAHSYAASDSLKTPSKKRQKQTK
IRNPGFEEKVDLFSGPLLPSEVRGILRRLWENEAELCSYISDIQHQHDTIFEKIAGYSMF
FLETVLVPPIKFRPPAKGGNSVMEHPHTVLLGKVLQANIALGNAHTNNSERSRIISRWMD
LQQSINVLVDNKNASSQSLKDGVMGICQYLEKKEGLFRQKMMGKRVNFACRSVISPDPYL
AVNEIGIPPYFALRLTYPERVTPWNAGKLRDAVINGPDIHPGATTYVDSVSTVKLPKDKK
MRVSISRKLPSSRGVVTQSGKIDEHEFEGKTVLRHLQDGDIVLVNRQPTLHKPSIMAHVV
RVLKGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDT
VRGLIQDNIVAAVLITMKNTFFNRSEFSQLLYGSGVFAAGPGSRPGEQKVSVLDSEGLME
SVLPAVWKPEPLWTGKQVITALLNHITRGCAPCIVENQGKIPKNYFASTNYKKGEEDQDH
NAEHDLLIWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTLFLQFHG
FTCGLDDLIILPNYDIQRKEKLEGEDVGEEVHCDFVKFKPGQIGPEELQLEIEKVISSDR
ESSTAILDMKMKNKLTNRLTREGSDILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQ
QISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMA
GREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVLKTS
FLKNFKALQDNRETICGKFQNQRQFNSYINELPKGLEEQAKRYIHEVQENSSEKQILPRH
KGKKKEHEKEKALAEEQAFLALVKQKYLSSLAESGEPVGVIAAQSVGEPSTQMTLNTFHL
AGRGEMNVTLGIPRLQEILMTAPNIIKTPVLTCPFADLRSKRDVVALVSKVKRVSVADLV
ESMEIELSFDRHDVARIYKLIMKLKETEFMSSEDIKDTLETTFLYELEDAIENHIIFLSR
ISGIKNFVSNSTTAVPGETDEDESGEKSTEVDNDDDDDEDDEKGGNDIDADAQKRKQQAS
DERDYSDESDVDHGEAELPPDPEKSKSEVEDPEDMDTSKDDGTIHSDEKDEQKADEGGGT
SARDFYSGKGFSSKKIKRAVKLECKGLSYEVHFRFTNEPHLLLDQLAQKTAKKVFIKGTG
KMSQCRLVQYDPDEKTVIWNDTKKPKRGENRPEAGADDSLYWAMKASGVDFKSLWEMHAD
LDVNRLYSNNVHAVLNTYGVEAARETLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGY
RPMSRHGCISESISPFLKMSFEMASKFIVEAASLGLKDDLETPSSRICLGLPVKVGTGCF
DLMQKLDS
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaactgagatggtgcgctcggtccgttttggcttcatgactgataaagaagtg
aggaagcagagtttagtgaaaatcacaaatcctaatttgcttgatacgttggacaagcca
attcctggcggactgtatgatttagctatgggacctctcgttgacggcgccgagtgtaaa
tcgtgcggccagcaatcgtttaattgctccggtcattgtggccacatcgagcttgtttcg
ccagcttacaatccattgcttgtgaaaatgctgagtaatattctcaataaagcatgcttt
tattgttttcattttcgatcaagcaaggcggaggctgagaactgtgtttctcaattggaa
aggataaaagaaggaaacattgttgcagcgaagaagttgagtttgcgacagaaggtgata
gacaagaaaaagatggactgggccgatgtagacgatgtagttgatccagaggatagtcaa
gggagtaatgtatcacattctggagtagattctgatgtcgaaaataaccacaagcatgag
aaagaggcattctgggactccaccttgctaactgaatctatgtcagttttgaatgaattt
ttaaaggcaaaagagaagaagtgcaagaactgcaaacgcagtaacccaaagatcaccaaa
ccaacatttggatggtttcatgtgaaaggaatttctagtacccaattgagagcgaatgcc
atactaagcagtgggttggacgtgacgcacagcggaggtggtgaggatagaccttcctct
gaggtgttaaatgctagtgattgttcatggaaggatggctctgacacagctgaagcccat
tcatatgctgcctcagatagcctcaaaacacccagcaaaaaaaggcaaaagcaaactaaa
attcgaaatccagggtttgaggagaaagttgatttattttcaggacctctcttaccatca
gaggttagaggtattctgagacgtttgtgggaaaatgaagctgagctttgctcatatata
agtgatattcaacaccagcatgatactatttttgaaaaaatagcaggctactcaatgttt
tttctagagactgttcttgtccctcctattaaattcagacctccggccaaaggtggcaat
tctgtgatggagcatccacacactgttctattagggaaggtgctgcaggcaaatatcgct
ttaggaaatgctcacacaaataattctgaacgctcaaggattattagtcgttggatggat
cttcagcaatctatcaatgtattagttgataacaaaaatgcgagtagtcaatctttaaaa
gacggtgttatgggaatttgtcagtaccttgaaaagaaggagggtttattccgccagaag
atgatgggcaaaagggtcaatttcgcttgccggtctgtcatatctccagacccttacttg
gcagttaatgaaattggaattcctccatactttgctttgagattgacatatccagagaga
gtgactccttggaatgctggaaaattgagggatgctgtcattaatgggcctgatatccat
cctggagctacaacttatgtggatagtgtatccactgtaaaactacctaaagataaaaag
atgcgtgtatcaatatctagaaaattaccctcgtcacggggtgtcgtaacccaatcgggg
aagatcgacgagcatgagtttgagggcaagactgtccttcgccacttgcaagatggggat
attgtgcttgtaaatcgtcagcccacgctccacaagccaagtataatggctcatgttgtt
cgtgtattgaagggagaaagaactctgcgcatgcattatgcaaattgcagctcatacaat
gcagattttgatggtgatgaaatcaatgtgcattttcctcaagatgaaatttctcgtgca
gaagcgtacaacattgttaatgctaatgaacaatatattgttccaacaaagggcgacact
gtgagaggcttgattcaggataatattgtcgctgctgtgcttattacaatgaagaataca
ttttttaatcggagtgaatttagtcagctgctttatgggtctggtgtatttgcagctggg
cctggttcgcgtccaggagaacagaaagtttcagtattagattctgaaggtctgatggaa
tctgtcttgcctgcagtgtggaaaccagagcctctttggactgggaaacaggtcattaca
gcattactgaatcacatcactagaggttgtgcaccttgtattgttgaaaatcaagggaaa
atcccgaagaactattttgctagcaccaattacaaaaaaggagaggaggatcaagatcac
aatgctgaacatgatttattaatttggaagaatgagctagtacgtggtgtcatcgacaaa
gctcaatttggaaagtttggcttggttcacacagtgcaagagctttatggatctaatagt
gcaggaattttgctttctgcattaagccggttattcacactcttcttgcagtttcatggg
ttcacatgtgggctagatgaccttatcatattacccaattacgatatccagagaaaggag
aaacttgaaggagaagatgtaggtgaagaggtccactgtgattttgtcaagttcaaacct
gggcaaataggccctgaagagctgcagttggaaattgagaaagtcatatccagtgataga
gaatcttcaactgcaatattggacatgaaaatgaaaaataagttgacaaataggctaact
agggaaggttctgatatactcaaacatttgctgactaaagggttgttgaaaccttttccg
aagaactgcatctccgtgatgaccactacaggcgctaagggtagtacggtgaatttccaa
caaatatctgcctatctaggacaacaggagttggaaggtaaaagagtgcctcgaatggtt
tctgggaagactttgccctcctttcctccgtgggattacactgctagagccggaggattt
atcactgatcgctttctttctggcctccgaccacaggaatattacttccattgtatggct
ggccgtgaagggttagttgacacagcagtaaagacatctcgtagtggatatctacagcgc
tgtctgataaaaaatctggagagtctcaaagtttgttatgactatacagttcgtgattct
gatggttcgatcgttcaattttactatggagaagatggtgttgatgtcctcaagacgagc
ttccttaaaaattttaaggcactacaagataatcgagaaactatctgcgggaaatttcag
aaccagcgtcaattcaacagttacattaacgaattacccaaggggcttgaagaacaagcc
aagcgctatattcatgaagtgcaagaaaattcatcagaaaaacaaattcttccaagacac
aaaggtaaaaagaaggaacatgagaaggaaaaggcattagcagaagagcaagccttttta
gcgttggtgaagcagaaatatctatcgagtcttgcagaatcaggagaaccagttggtgtc
attgcagctcagtcagtaggtgaaccatcaacgcagatgacactcaacacttttcatctg
gctggccgtggagaaatgaacgtgacccttggtattcctcgtctccaggagattttgatg
actgcaccaaatatcattaagactcccgttttgacctgcccattcgctgatttgagatcc
aagcgtgacgtcgtggccctagtttcaaaggtgaagagagtctcagtggcggatctggtg
gagagtatggaaattgaactctcatttgatcggcatgacgtggctagaatttataagttg
ataatgaaactcaaagagactgagtttatgtcgtcagaggacattaaggatacgctcgaa
actacttttctatatgaattggaggatgcaatcgaaaatcatatcattttcctctccaga
attagtggcattaaaaacttcgtgtctaattcaacaacagcagtaccaggtgaaactgat
gaagatgaatcaggggaaaaatcaacagaagtcgacaatgacgacgacgatgatgaagat
gatgagaaggggggaaatgacatcgatgcagatgctcagaagagaaagcaacaagcttcg
gatgaaagggactatagtgatgaatctgatgtcgaccatggtgaagctgagttacctcca
gatccggagaaaagcaagagcgaggtagaagaccccgaggacatggataccagcaaagac
gatggaaccatacactcagatgagaaagacgaacaaaaggccgatgagggcggaggtaca
tccgcaagagatttttattcaggaaaaggtttttccagcaagaaaataaaacgtgctgtg
aagttggaatgcaaaggattgtcgtatgaagtccacttcagatttaccaacgagcctcat
ttattgcttgatcagcttgcccagaaaacagcaaagaaggtattcatcaaggggactggc
aagatgagccaatgcagattagtacaatacgaccctgacgagaaaacagtcatctggaac
gacaccaagaagccgaagaggggcgagaacagaccggaagcaggtgcagacgactctttg
tattgggcaatgaaggcgtccggtgtggacttcaagtcgctgtgggagatgcacgcggat
cttgacgtgaatcgtctctattcgaacaatgtgcacgcggtgctgaacacatatggtgtg
gaggccgcccgagagactctgataagggaggtgaagcaggtgttcgatatctatggcgtg
aagatagactaccggcatttgagcttgatcgcggattacatgacccatacaggtgggtat
aggccaatgagtcggcatgggtgtatatcagagtcgatatctccgttccttaagatgtcg
tttgagatggcgtccaaattcatcgttgaagcagcgtctctcgggctaaaagatgaccta
gagaccccgtcgtccaggatctgcttaggtctgcctgtcaaagtcggtacaggctgtttt
gacttgatgcagaaattggattcttga
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integrated database retrieval system
