Salvia splendens (scarlet sage): 121792794
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Entry
121792794 CDS
T07627
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1-like isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121792794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121792794
Enzymes [BR:
sspl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121792794
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
121792794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
121792794
NCBI-ProteinID:
XP_042046822
LinkDB
All DBs
Position
2:39814340..39833210
Genome browser
AA seq
1415 aa
AA seq
DB search
MSIIDQGSMQFTKKPYVEDVGPRKIESIKFCTLSEKEILKISEVQVSRGIYYNDVRKPEA
SGLLDPHMGPPNKLGKCETCGGNFHNCPGHCGYLNLAFPVYNVGFLATIVDILKCICKKC
SIILLEENERRDFLKQMRGPKLEHLKKIELQKKIVKRCNGMGGTRRAIVCSRCGYINGMV
KRAQLKIVHDRARVADSADCSLEECRLALSHTKTNMPLPSYFDPKRVYDLLKNMRDEDCE
LLYLNDRPEKLMLTSILVPPTSIRPSVFVDGGTQSNENDITERLKYIIQANASVRSEMAE
TDSQSNRCMVSWQLLQEEVAQYMNSDVRGLTPQPANSTRRPLSGFVQRLKGKQGRFRCNL
SGKRVEFTGRTVISPDPNLKITEVAIPILMARILTYPERVSHHNIEKLRQCVRNGPQKYP
GAKFIRTPEGHEISLMYSARKHHADQLKYGCIVHRHLEDGDVVLFNRQPSLHRMSIMSHR
ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEI
LVASTQDFLTSSFLITRKDTFYDRSAFSLMCSYIGDAMDPIDLPTPALVKPVELWTGKQL
FTVLLRPHAKMRVYLNLTVAEKSYGKSRETMCSKDGFVYIRNSELISGQLGKATLGNGNK
DGIYSVLLRDYGPHAAATCMNRMAKLSARWIGNHGFSIGINDVQPGVTLNKEKKATLDNE
YGHCTDYIRSYTSGSLELLPGCNNAETLEAKITETLNKIRETTADVCMKNLNWRNSPLIM
SQCGSKGSPINICQMIACVGQQSVGGHRAPNGFVDRTLPHFERGAKDPDAKGFVQNSFYT
GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIFYDNTVRNASACIVQF
AYGGDAMDPAQMEEKSGLPLNFERLFMKAKATCPATEQKSLTSDEIEKIVKNTIERRLVK
SSMTSEGGSSESSQESSPSLETASKDECLAAFAESISNFIKKKGPSSVREKLKLSEGRHS
EEDKRYLENVASNISGITQRQLMVFLETCISRYNSKKIEAGTAIGAIGAQSIGEPGTQMT
LKTFHFAGVASMNVTLGVPRIKEIVNGAKNIKTPIITTHLDVNNNDITAKMVKGRIEKTL
LEQVARSIKTSQSSRSASVVVTLDMGRIKEAHLHIDAYSVKESILQTTPKLKLKEQQIRV
VDEQKLEVDLKDDKSKLQFELHGLKSKLAKVVVKGIRSVERAIILNESKEKDPACKKLTL
LVEGSGLLSVMGTEGINGYKTVSNHIMEVKQVLGIEAARKKIIDEINYTMSSHGMTIDIR
HMMLLADLMTFKGEVLGMTRHGVERMRDSVLMLASFEKTADHLFNASVNGRVDKIEGVSE
SIIMGIPMQVGTGMLKLKQCVPSVKFTYAPDPIIR
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgagtattatagatcaaggcagtatgcagttcaccaagaagccatatgtggaagacgtc
ggcccccgaaagatagaaagtattaagttctgtacactatctgagaaggaaatactaaaa
atttctgaagttcaagtttcacgcggcatttactacaatgacgtcagaaagcctgaagct
agtgggttgttagatcctcatatgggaccaccaaacaagcttggcaaatgtgaaacatgt
ggtggaaattttcataactgcccaggtcattgtggatacttgaatctagcctttcctgta
tataatgtcggatttttggctacgatcgttgacatattgaagtgcatttgcaagaaatgc
tccataatactccttgaagaaaatgagcggcgagatttccttaagcagatgagaggtcca
aaacttgagcatttgaagaagattgagttacagaaaaaaatagtgaaaaggtgtaatggc
atgggaggaactaggcgcgctattgtgtgctccagatgcggatatattaacggtatggtt
aaaagggcacaattgaaaatcgtacatgatcgtgctagagttgcagacagtgctgattgt
agcttggaggaatgccgattagctttatcccatacaaagacaaatatgcctttgccttca
tattttgatcctaaaagggtctatgacctactgaaaaatatgcgtgatgaggattgtgag
ttgctttatctaaatgatagacctgaaaagcttatgcttactagtattcttgtgccacca
acttccatacgaccttcagtttttgtggatggtggaacacagagtaatgaaaatgacatc
acagaaagactaaaatatatcatccaagccaacgctagtgttcgttcagaaatggcagaa
acagactctcaaagcaacagatgcatggttagctggcagcttctgcaagaggaggttgca
caatatatgaatagtgatgttcgtgggttgacaccacaacctgcaaatagtactagaaga
ccattgagtggttttgttcagcgtctaaaaggaaagcaggggagatttcgttgcaattta
tcagggaagcgtgtagagtttactggcaggacagttatttctcctgatccaaatttgaaa
attactgaggttgctattccaattttaatggctcggattttgacttatcctgaacgagtt
tcacaccataatattgagaaattgcggcaatgtgttcgtaatggcccccaaaaataccct
ggtgctaagtttataaggactcctgaaggtcatgagatatcattgatgtattctgcccgg
aagcatcatgcagatcagttgaagtatggatgcattgtgcatcgtcaccttgaagatgga
gatgtagttctgtttaataggcaaccgagtttgcaccgaatgtcaatcatgtcccatcgg
gcaaggataatgccttggcgcacactgagattcaatgagtcagtgtgcaacccttataac
gcagactttgatggtgatgagatgaatatgcatgtaccacaaacagaagaggcccgtact
gaggctcttatgctgatgggggtgcagaacaatttgtgtaccccgaaaaatggagaaatc
ttggttgcatcaacacaagattttcttacttcttcctttcttataacaagaaaagacaca
ttttatgaccgctcggccttttcactcatgtgttcatatataggtgatgccatggaccca
attgatttgccaactccagcattagttaagccagtggagctctggactggtaaacaatta
ttcactgtgctattgcgtccccatgcaaaaatgagagtatatttaaatctaactgtagca
gaaaagtcatatgggaagtctagagaaactatgtgttccaaggatggttttgtgtatatt
cgcaatagtgagctcatcagcgggcagcttgggaaggccacattaggtaacgggaacaag
gacggtatttactccgttcttctcagggattatggtcctcatgctgcggctacatgtatg
aatcgcatggcaaagttaagtgcacgatggataggaaatcatggattttcaattgggatc
aatgatgttcaacctggggttacattaaacaaggagaagaaggcgactctggataatgag
tatggtcattgtaccgattacataagaagttacacatctggaagcttggagctgttaccc
ggctgcaataatgctgagactcttgaagccaagataactgagacacttaataaaattcga
gaaactactgctgatgtttgcatgaagaatttaaattggaggaacagccctttaataatg
tctcagtgtggttctaaaggttctcctattaatatctgccagatgattgcttgtgttggt
cagcaatctgtaggaggtcatagagctcccaatgggtttgttgatcgaacactgcctcat
tttgaaagaggagcaaaagacccagatgctaaaggctttgttcaaaattccttctacact
ggtttatctgcgactgaattttttttccacaccatgggtggtagagaaggtcttgtggat
acggcggttaaaacagccgatactggttacatgtctcgtagattgatgaaggctttggag
gatctttctatcttttatgataatacagtgagaaatgccagtgcttgcattgtgcaattt
gcctacggtggtgatgctatggatcctgcacagatggaagagaaaagtgggctcccactg
aactttgaaagattatttatgaaagccaaggctacctgccctgcaacagagcaaaagagt
ttaactagtgatgaaattgagaaaatagttaaaaacacaatcgagagaagactagtaaaa
tcatccatgacttctgaaggagggtcttcagagtcttctcaagagtcttctccttcatta
gagacagcatctaaagatgaatgtttggcggcttttgcagagtcaataagcaattttatt
aagaagaaagggcctagctcagttcgcgagaaactgaaattgagtgaagggagacattct
gaagaagataaacgctatttggaaaatgttgcctctaatatatctgggataactcagcga
caattgatggtcttcctagaaacttgtatatctcgttacaattccaagaaaattgaagcg
ggaactgcaataggagccattggagctcagagtatcggagagccaggaacgcagatgaca
ttaaaaactttccactttgctggagtcgcaagcatgaatgttacccttggggttcccagg
attaaagaaatcgtcaatggtgctaaaaatatcaagacgccaattattactacacatctg
gatgttaacaacaatgacataacagctaaaatggtgaaggggcgtattgagaaaaccctt
ctggagcaggtagcccggagcataaagacttcacaatcgtcgaggtcagcatccgttgtt
gtaacacttgacatgggtagaataaaagaggctcacctacatattgatgcatactcggtg
aaggaatcaattctacaaaccaccccaaagttaaaactgaaagagcagcaaattagagta
gttgatgaacaaaaacttgaagtcgatctgaaggatgataaaagtaaacttcaatttgaa
ctccatgggcttaagagtaagctcgccaaagttgtagtcaagggaatcaggtctgttgag
cgggctataatacttaatgaatcaaaagaaaaagatcctgcgtgcaaaaaattgacattg
ctagtagaggggagtggtcttttgtctgtcatgggcactgaaggaattaatggttacaag
acagtgagtaatcacatcatggaagtaaaacaggtacttggaattgaagctgcaaggaag
aaaataattgatgagataaactacaccatgtcaagccatggcatgaccatagacatacga
cacatgatgctgctggctgacttaatgacattcaagggggaagtgttgggtatgacaaga
catggtgtggagagaatgagggacagtgtcttgatgctcgcttcatttgaaaagaccgca
gatcacctcttcaacgcttctgtgaatgggagagtcgataagattgaaggagtctctgaa
tccatcatcatgggcatacccatgcaagttggaacgggaatgcttaaattgaagcaatgt
gtgccgtctgttaagtttacgtacgctccagatccaattatacgatga
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integrated database retrieval system
