KEGG   Salvia splendens (scarlet sage): 121796293
Entry
121796293         CDS       T07627                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    121796293
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sspl03021]
    121796293
Enzymes [BR:sspl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     121796293
Transcription machinery [BR:sspl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     121796293
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 CBM_14 DUF4606 Neil1-DNA_bind
Other DBs
NCBI-GeneID: 121796293
NCBI-ProteinID: XP_042051049
LinkDB
Position
3:45026446..45037659
AA seq 1435 aa
MDNGLPEVQQVTSGRLKGVRLSILSDEDAGKLSAVVVGTVNEVSDAALGLPTSNATECTT
CGAKYSRDCEGHFGLIKFPYTILNPYFMSEVAQILNKICPGCKSLRHSKIKNAHSASSHQ
PRKCRYCTGQSKAGYPKMKFKVSTKDVFAKSAIIAEVSEALVSKSSYGCLASDYWDILPK
DSAQDHSSQPPNKRILLPAQVYEILKDVSPEVLGKSFKRKNLIFLNSLLVTPNSARVREF
GQRITVDETTRAYRKLFDFRGTPNELSARVLERYKLSKIRSEKLSHLQKAYEKQAGNESA
SSSSGLKNIKELLLGKRTDHSFRMVVVGDPRVKVHEIGVPFQVAENLLMNDHVNEWNWEK
LMPCCDYMLHRRGNFTALRDGQRRTIWFKDMLRAGDSIRRPLIDGDIVLINRPPSIHQHS
LIALSVKILPINSVLSINPLICSPLKGDFDGDCLHGYIPQSLNTRIELNELVSLESQLAN
GQNGRNLLALGQDSLTAAYLSLQDGVIMNKAKMQQLQMFSSCMPVLPAVINSKTGAHFWT
GKQMFSLLLPRDFEFTSACNDVCIRQGELVSSSHGSSWLNDNSGNLFECLLRHCKDRALE
FLGSGQEVLCEWLSMRGLTVSLSDLYMSHDSKSHMNLLDEISCGLLEAERLSKASLLMVG
CNQDFLVDCSEESDYMENFLKKRTLIAQQTIPELFHASVSAAKAVFRDMQSLAYKYSGSG
NSFIAMLKAGSKGNLQKLFQHSMCVGLQHSLAPLSFSVPRHLSCASWNYQKGLPDLQTSQ
GYIPCTMIGNSFSTGLNPQECFVLSLTTRDGSFGGNADIPGTLNRRLMFFMRDLVTGYDE
TVRSCYGNQVIQFHYCSEEMNLTNVDGRMGGHPVGSTAACAITEVLYSALDQPISVLEPS
PMLNLKKVLECGVKKSTGSKSASLFLSRRLRRWANGSEYGALEVKNHLECLPFSNIVSEI
RICYSKKTNSGTSVSPWACHFHVKKEVANKRRLTMRSIINSLRMNNKLNGAKSKFDLPKL
HITSEVCSEADTHTDSTICISAALTESIHNIPDVDILRDMIIPALLQTVVKGFVEFKKVD
ILWKEGSDCSKFQRCPSGELFLRVVTSEYCERTKFWSTLIDKCLVIRNIIDWERSHPDVL
LDYCEAYGIDVAWQYFVTTLHAAIRDTGKSILPEHLFVTANCLSATGEFAPLNSRGLAHQ
RKETSTYAPFSQACFLNPSDCFIKAAKVEQIDGLKGSLEALAWGQTPSIGTGCQFDLLYK
GKGHEPAERTDVYSLLSTHVASDKTNAKVKPHDRKSIASYHFNSKEQKISLHKMLAQHFT
VVGIQKVSRKLKRILKEYPANRRLNEEDRSTAMMALKFHPKLQDKCGTGILDIKVGRHPE
HKENCFFLVRTDGSEEDFSYHKCINHALEMISPDKAKTHQTKNNKVASTPAVIVE
NT seq 4308 nt   +upstreamnt  +downstreamnt
atggataatgggttgcctgaagttcagcaagttacatcaggtcgactgaagggagttcgt
ttgagtattttatctgatgaagatgctggaaaactatcagcagtggtcgtcggaacagtc
aatgaagtgtcggatgctgcattagggctccctacatcaaatgctactgaatgcactacc
tgtggtgccaaatattcaagggactgtgaagggcattttggtttgatcaaatttccatat
acgatcctaaatccttatttcatgtctgaagttgcgcagatccttaataaaatctgtcca
gggtgtaaatctcttcggcatagtaagattaagaatgcgcattctgcttcaagtcaccag
ccaagaaaatgcagatattgtactgggcaatccaaagctggctatccaaaaatgaaattc
aaagtatctacaaaagacgtgtttgcaaaaagtgcaattattgctgaagttagtgaagca
ttggtgagtaagagctcatatgggtgcctggcttctgattattgggatatactccctaaa
gattcagctcaagaccacagtagtcagccgccaaacaaaagaattctattgccagctcaa
gtttatgaaattttaaaggatgtatctccagaggttttgggaaaatctttcaaaaggaaa
aatttgatctttctgaactccttgctggtgactccaaatagtgctcgagtgagagaattt
ggtcagcgcataactgttgatgagactacgagggcgtacagaaagctttttgattttaga
ggcacacccaatgaactaagtgctcgtgttctcgaacgttacaaactttccaagatacgc
tcagaaaagctgtcacacttgcagaaagcatatgaaaaacaagcaggaaatgagtcagct
tcgagttcatcaggtctaaaaaacataaaagagttgctacttggaaagcgaacagatcat
tctttccgcatggttgttgtcggtgaccctagagttaaggttcacgaaattggcgtgcct
tttcaagtcgcagagaatttgcttatgaacgaccatgtcaacgaatggaactgggagaag
ttgatgccctgctgtgattatatgcttcaccgaagggggaactttacagcacttcgggat
ggtcagaggagaactatatggtttaaggacatgttgcgtgcaggagattccattcgtagg
cctcttattgatggagatattgtgttgattaataggcccccatctattcatcaacactcc
cttattgctctatccgtaaaaattctcccaatcaattctgttctgtccattaatcctcta
atatgttctcctctcaaaggggactttgacggagattgtcttcacggttacattccccag
tcattgaacaccagaatagagctcaatgagcttgtttcattagaaagtcagttagccaat
ggacagaatggtcgaaaccttttggcactaggtcaagatagtttaactgccgcatatcta
tctcttcaagatggagttattatgaataaagctaagatgcagcagctgcaaatgttcagt
tcttgtatgccagtattgccagctgttatcaattctaaaactggtgctcatttttggact
gggaaacaaatgtttagccttcttttgcctagggatttcgaattcacttctgcatgtaat
gatgtatgtataaggcaaggggagcttgtgtcgtcttcccatggatcatcttggttaaat
gacaacagtgggaatctatttgaatgccttctaagacattgcaaagatagagcacttgaa
ttcctaggcagtgggcaggaggttctttgcgagtggttgtcaatgaggggactcactgtt
tcattatcagacctttacatgtcccatgactctaagtctcacatgaatcttctagacgaa
atatcatgtggcttgctggaagcagaaaggctatccaaggctagtttgctaatggtgggt
tgcaaccaagattttcttgtagattgctctgaagagagtgattacatggaaaattttctc
aagaagaggactttgattgctcaacagactataccagaactttttcacgcctcagtttct
gcagccaaggcagtatttcgggatatgcaaagtctagcttacaagtactcgggcagtggt
aattcatttatagctatgttaaaggctgggagcaaaggcaatttgcaaaaattatttcaa
catagcatgtgtgtggggttgcagcactcgttggctccattatctttttcagttccccgt
cacctgtcttgtgcttcatggaactaccagaagggtcttccagatttacaaacatcgcag
ggttacatcccgtgtacaatgattggcaactccttctcaacaggtttaaatcctcaggaa
tgttttgttctttctttgacaacccgtgacggatctttcggtggcaatgctgatatccca
ggaactttaaaccgacgcttgatgtttttcatgcgggatttagtaacagggtatgatgaa
actgttaggagttgctatggaaatcaggttatccagtttcactattgctccgaggagatg
aatcttaccaatgtcgatggccgtatgggtggtcatcctgttgggtcaactgcggcttgc
gccattacagaagttttatacagtgcgctggatcagccgatcagtgtgttagaaccgtca
cctatgctaaatttaaagaaagtgcttgaatgcggagtgaaaaagagtactggctctaaa
agtgcttcactgtttttatcccggagacttagaagatgggcaaatggttctgaatacgga
gctttagaagtgaagaatcatttggagtgtttgcctttctcgaacatagtctcagaaata
aggatatgctattcaaagaagacaaatagcggcaccagtgttagtccttgggcttgccat
tttcacgtaaaaaaggaagtcgccaacaagaggcggctgacaatgcgctcaattatcaat
tctcttcgtatgaataataaattaaatggagccaaatccaagtttgatcttccgaagttg
catataactagcgaggtttgttctgaagctgacactcacactgactctacaatttgcata
tcagctgcattaactgagagcattcacaatatccctgatgtggacattcttcgtgatatg
attatacctgcccttcttcaaactgttgtaaaaggatttgtggaattcaagaaggttgat
atcttatggaaagagggatccgattgttcaaaattccaaagatgcccttcaggtgaactc
ttcttgcgagttgtcacatcagaatactgtgagaggaccaagttctggagtacactcatt
gataagtgccttgttataagaaatataattgactgggagcgcagccatccagatgttctt
ctcgattattgtgaagcatatggaattgatgttgcatggcaatattttgtaaccactttg
catgctgctatacgtgacactggcaagtccatccttccggaacatttatttgttacagcc
aattgcctttcagctacgggagagttcgcaccattaaattcaagaggactggcacatcaa
agaaaggaaactagtacttatgcacccttcagtcaagcctgctttttgaatcctagcgat
tgttttataaaagcagccaaggtggaacaaatcgatggtcttaaaggaagcctcgaggct
ttggcatggggacaaaccccttctattggaactggttgccagttcgatcttttatacaag
gggaagggacatgaacctgctgagcgcacagatgtttacagtctgctgagcacccatgtt
gcgtctgataaaactaatgctaaggtgaaaccacatgacagaaaatctattgcttcctat
catttcaactcaaaggagcaaaagatctcgcttcataagatgctcgcacagcatttcact
gtggttgggattcagaaagtttcacggaaactaaagcgtatcctgaaagagtatcctgca
aaccgtcgcctgaatgaagaagataggtctacagcaatgatggctctaaagttccatcca
aaattgcaagataagtgcggaactggcattttagacataaaggttggccgtcatccagag
cacaaagagaactgctttttcttggtacgcacagatggcagcgaggaagacttctcgtac
cacaaatgcatcaatcatgctctggaaatgatatctcccgacaaggccaagacacatcaa
accaagaacaacaaggtcgcctcgactcctgcagtcatcgtggaatag

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