Solanum stenotomum: 125847983
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Entry
125847983 CDS
T08385
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125847983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125847983
Enzymes [BR:
sstn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
125847983
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125847983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
SRPRB
FtsK_SpoIIIE
ATP_bind_1
ABC_tran
AAA_24
AAA_29
DUF1611
Motif
Other DBs
NCBI-GeneID:
125847983
NCBI-ProteinID:
XP_049383714
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All DBs
Position
1:102573808..102586774
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AA seq
439 aa
AA seq
DB search
MAYGGTNVNPLAATGGSTTVRQVKLEKECELRVEASADSPLRLRLLTGTAEIFGTEIPPG
IWLNFPPRLKFAVFTWYGATIEMDGSTETDYTADETPMISYINVHAVLDGRRNRAKASPS
DSDTSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCVAATP
IELPIDPVEGIPLEMPMVYFFGHVTPSANIDHYKVLVKELAQTLETQFSGNAESRASGMV
INTMGWIEGVGYELLLHAIDTFNATVILVLGQEKLCSMLKDVLKNRPNVDVVKLQKSGGV
VSRNAKVRQKARGYRIREYFYGPSNDLSPHSNVVNFSDLFIYRIGGGPQAPRSALPIGAE
PAADPTRLVPVSISRDLLHLVLAVSYAKEQDQIISSNVAGFIYVTDIDLHRKKITYLAPC
AGELPSKNLIVGTLTWIEN
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcttatggaggcacaaatgtcaatccattggcagcaacaggtggttcaacaacagtg
aggcaggtgaagctggaaaaagaatgtgagctccgagttgaagccagcgctgactctccc
ctccgtcttcggctcctaactggcacggctgagatttttgggactgaaatcccacctgga
atctggctcaacttccctccaagacttaaatttgcagtttttacttggtatggagccaca
atcgagatggacggttccactgaaactgattatacagcagatgagacgccgatgataagc
tatataaatgtccatgctgtacttgatggacgtagaaatcgtgccaaagcttctcctagt
gattctgacacttctcagggcccaagagttattgttgtgggacctacagattccggcaag
agtactctgtcaaggatgcttcttagttgggctgcgaaacagggatggaaacctactttt
gttgatttggacataggtcaaggatcgataactattccaggatgtgttgctgctacacca
atcgagttgcctattgatccagttgaaggaattccacttgagatgcctatggtctacttc
tttggccatgtgactcctagtgccaacatagatcactacaaggtactcgtcaaggagctt
gctcagactctggagacgcaattttctggcaatgctgaatctcgagcttcaggcatggta
ataaatacaatgggatggatagagggagttggttatgagttgctactccatgcgattgat
acgttcaatgccacagttattcttgtcttgggtcaggaaaaactttgcagcatgctaaaa
gatgtattgaagaatcggcctaatgtggatgtggtgaaacttcaaaaatctggtggtgtt
gtatcaaggaatgcaaaagtacggcagaaagcaaggggctacagaatacgggaatatttt
tatggcccttcgaatgatctctcaccacattctaatgtggtgaacttcagtgacttgttc
atctaccgtatagggggtggaccacaagctccacgctcagctttacctattggtgcagag
cctgctgcagatcctacaagattggttcctgttagtatcagccgagacttgctccatttg
gttcttgctgtctcatatgccaaagaacaagatcaaataatttccagtaatgttgctgga
ttcatctatgtaaccgacatagacttacacaggaaaaagataacatatcttgcaccatgt
gctggagaacttccaagcaaaaacctaattgtgggaaccttaacatggatcgaaaactga
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