Solanum stenotomum: 125866048
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Entry
125866048 CDS
T08385
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125866048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125866048
Enzymes [BR:
sstn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125866048
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
125866048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
125866048
NCBI-ProteinID:
XP_049402290
LinkDB
All DBs
Position
5:60301754..60325290
Genome browser
AA seq
1675 aa
AA seq
DB search
MNQGASETVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLQIPVPNGLYDPAMGPLDHYSQ
CKFCCQSNCSGHCGHIELVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELE
LIAKGDVVGAKMIDALSPDNSTDQEGSEGSHMSCAMDDLNMQDHCEYNKRLSWDNFQFTE
AMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMDISNKQIRENYINSGRRFNLHDTG
GSEENPSPEVVNATKPLGEAETSLCVTSTDGVENSKERKRQGGDQSDVVEQQKDSFSVAH
LPSQVRSIIEHLWENEAPLCTFFCDIQSQHRNTSGKVAGPSMFFLDSILVPPIKFRPPAK
GGDSIMEHPHTVLLGKVVQANIALGNAHINRAGRSKIISRLMDLQQSVNVLFDSKTASGP
GQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFALRLTY
PERLTPWNAVKMRDAVINGPENHPGAVSFADRIATVKLPSNKKMRVAISRKLPSSRGAVT
QSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS
TYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTM
KNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSVVDFEGVVQTVLPAVWKPKPLWTG
KQVITALLNHLTKGCAPCTVKNKGKIPYPYFLSKSRLVEYQSREEQEDRTAENEFLIWKN
ELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGVDDLVIL
PHFDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLELQLEIEKAISSNKEAATAALDMKM
KNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKR
VPRMVSGKTLPCFPPWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRS
GYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETI
CQRLRHGRKLNSYIEKLPDGLEEKVKHFWEKRTKKLEKKLGKLVKKEEMVKQLKEEEADF
LELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL
MTASEAIKTPILTCPFLGWKSKNDAQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQ
LYKLTVKLKKHDFVSSEDCEYTLKFVFLRELEDAIESHLALLSKINGIQNFKTSSESVDS
DETEENASSTRHEEEMLDDDGEDEDERTEDLSSDAQKRKQQTTDEMDYDDDENEDEAETT
AEIEDEKSEQTDEIDNGDEEEIGNRGNEEQTFKLQSTEEDISNTKSSKSKTKTTVKQNKK
KERRSKKDSDRCVFVDVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYIKNSGKIDQCRM
VKYEVTENTVMWDEYQTKQQSQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRA
MLNTYGVEAARASILREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESL
SPFLKMSFETASKFIVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLDI
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagggtgcatcagagaccgttgaagcggttcatttcagtttcatgacagatgaa
gaagttcgtaggcatagtgttgtaaaagtcacaagccctaatttgcttgatggattacag
ataccagtgcctaatgggctctatgatccggcaatgggtccccttgatcattattctcaa
tgtaaattttgttgccaaagtaactgctctggtcactgtggtcatattgaacttgtttca
ccagtctacaatcccttgcttttcaatatgctgcacaatcttctgcaaagaacatgcttt
tattgcttccattttagggcatcaagagcagaggttgaaaagtgtgtttctgaattagag
ttaattgcaaaaggtgatgttgttggggccaaaatgattgatgccctttctcctgataac
tctactgatcaggagggaagtgaagggagccatatgtcatgtgcaatggatgatttgaat
atgcaggatcattgtgagtacaataagaggctatcttgggacaacttccagtttactgaa
gccatggcagttattgatagaattctcaagacaaaaactgagaaatgtagcaactgcaaa
gcaaagaatccaaagatcagaaagcctagttttggacggtttcatatggatatctcaaat
aagcaaattagggaaaattatatcaacagtggtcgcaggttcaatctgcatgacactggt
ggaagtgaggaaaatccttcccctgaggttgtaaatgccaccaagccgttaggggaagct
gaaaccagcttatgtgtgacttctactgatggagtagaaaattctaaggaacgcaagagg
caagggggtgatcagtctgatgtggttgagcaacagaaagactcattttcagtagcacat
ttaccatctcaggtcagaagtattatagagcatttatgggaaaacgaagctcctctttgc
acattcttctgtgatattcagagccagcaccgtaatacatctggcaaggtggctgggccc
tctatgttctttttggattctattctcgtaccaccaatcaaattccgtcctccagccaaa
gggggtgactctattatggaacatccacatactgttcttcttggtaaggtcgttcaggca
aatatagctttgggaaatgctcatatcaaccgggctggaaggtctaagatcattagccgc
ttgatggatcttcaacaatctgtaaatgtgctgtttgatagcaaaacagcttctggtccg
ggtcaaaaagatgttggttcgggcatatgtcaaatgttggagaagaaagaaggtattttc
cgccagaaaatgatggggaagagagtcaattttgcctgccgatcagttatatctccagat
ccttatttgtctgtcaatgaaattggaattccaccatattttgctttaaggctaacctat
cccgagaggttgactccttggaatgctgttaaaatgagagatgctgtcatcaacgggcct
gaaaaccatcctggtgctgtctcttttgctgatagaatagctactgtgaaactaccatca
aacaaaaagatgcgtgtagcaatatctagaaaattgccttcttcaaggggggcagtgact
caatctgggaggaacaatgagtatgaatttgaaggcaaagttgtttatcggcacttgcaa
gatggggatgttgttcttgtgaatcgacagcctacgcttcacaagcccagtataatggct
cacgttgtccgcgtactgaaaggagagaaaactcttcgcatgcactatgctaattgcagt
acctataatgccgattttgacggtgatgaaatgaatgtccactttccacaagatgaaatc
tctcgtgctgaagcatataacattgtaaatgctaatgaacagtacattgttccgactaaa
ggagatacagttagaggcctgattcaggatcatattgttggtgcagtgattcttaccatg
aagaatacttttttgacccttcatgagttcaaccaacttctgtatggatctggtgtgttt
gccgctgggcctgctccaacttctggaaaccattcaaataaagtttccgtagtagatttt
gaaggtgttgtgcagactgtcttgcctgctgtgtggaaaccaaagcctctttggacaggg
aagcaggtcatcactgcattactaaatcatctgacaaaaggttgtgcaccttgtaccgtc
aaaaacaaagggaaaattccatatccgtatttcctgagcaagagtcgcctagttgagtat
cagtcaagagaagaacaagaagatagaaccgctgaaaatgagttcttaatttggaaaaat
gagctcgtgcgtggtgtaattgacaaggctcagtttggaaagtttggtttagttcacaca
attcaggagctttatggatccaacaaagcaggcattttactttctgctctgagtcgttta
tttactattttcttgcagctgcatggtttcacttgtggtgttgatgatcttgtcatctta
ccacatttcgatattcggaggaaggaggaacttgaaggagatgatgttggtgaagaggct
cattgtgattttgtgaagttcaagcgtggagaaataggccctttggagctccaactagaa
attgagaaagcaataagcagcaacaaagaagctgccacagcagccttagacatgaagatg
aaaaataaattggcaaataaaggctcacaatttaataaagagttgctgctgaaaggattg
ttgaaacctttccccagaaactgcatcgcccttatgacaattactggggcgaaagggagt
acggttaattttcaacaaatttcctcgtatctgggtcaacaagagttggaaggaaaacga
gtgccacgaatggtttctgggaagactttaccctgttttccaccatgggattgtgcttcc
agggcaggaggttatgtcagtgatcgctttctttctggacttcgtccccaggagtactat
tttcattgcatggctggtcgtgaaggattggttgatactgctgtcaaaacatctcgcagt
ggttatctgcaaaggtgcttgataaaaaacctggaatctcttaaagtctgttatgattat
actgtccgtgacgcagatggttcaattatccaattttattatggagaagatggtgttgat
gtgcatcggacaagttttctcaaaaacttcaaagcactgaaaaataatcaagaaaccatt
tgccaaaggttgcgtcacggacgcaagctcaattcgtatattgagaaattgcctgatggc
ctggaagaaaaagtgaagcacttctgggagaaaaggacaaaaaagttagagaagaaatta
gggaagttagtgaaaaaggaagagatggtgaagcaactgaaagaggaggaggcagacttt
ctagaactagtggggcaaaaatacttctcaagtctggcagattcaggagagccagttggt
gtccttgctggtcagtcagtaggtgaaccttcaacccaaatgacactgaacacttttcat
cttgcgggccgtggagaaatgaatgtgactcttggaattccacgtcttcaggagattctg
atgactgcctctgaggctattaagactcccatcttgacgtgccccttcctcggctggaaa
tcaaagaatgatgcccagtctcttttggcaaaagtgaagaagatcactgtggcagatatg
attgagagtatggaggtcaagcttttgccattatcaatctacaaccatcaagtttctcaa
ctatacaagctcacagtgaagctcaagaagcatgattttgtgtcatcagaagattgcgag
tataccctaaaatttgtgttcttaagggagttggaggatgcaatagaaagtcatttggcc
ttgctctctaaaattaatggcatacagaacttcaagacaagctcggaatcagtggattca
gatgagactgaagaaaatgcttctagcaccagacatgaagaagagatgctggatgatgat
ggtgaggatgaggatgaaagaactgaagatctcagttcagacgcacaaaaaaggaaacag
caaaccacagatgagatggattatgatgatgatgaaaatgaagatgaagctgagaccact
gcagaaattgaagatgagaaaagtgaacaaacagatgagattgataatggtgacgaagaa
gaaattggaaaccgtggcaatgaagagcagacgtttaagttacagtctacggaagaggac
atatcaaataccaaatctagtaagtctaagaccaaaacaactgtcaaacagaataaaaag
aaagaaaggcgtagcaaaaaggattcggataggtgtgtctttgttgatgtggagggactg
cattttgaggtccactttagattcgtcaatgaacctcatatcttgttagctcaggttgcc
caaaagactgcaaagaaagtgtatattaagaactctggtaaaatcgaccaatgcagaatg
gtcaagtatgaagtaactgaaaatactgtgatgtgggatgaatatcaaacaaagcagcaa
agccaagattctgattctgcttattgggccctgaaagcagctggagtggattttggtacc
ttctgggaaatgcaagatgaccttgatgttactcgtatatacacgaataatattcgtgct
atgctgaacacctatggagttgaagctgcccgggcatcaatcttaagagaggtcaaaact
gttttcggtatatatggagtggagattgattttcgacatttgagtctaatagctgacttc
atgacccatacgggtggataccagccaatgagcagacatggaagcatatctgagtctctg
tcaccgttccttaagatgtcgtttgaaacggcttcaaaattcatagtcgaagcagcagct
catggtttaactgacaacttggagacaccatcctccagaatttgcttagggttgccagta
aagatgggtactggttgttttgacataatgcagaagctagatatttga
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integrated database retrieval system
