Solanum stenotomum: 125866962
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Entry
125866962 CDS
T08385
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
sstn
Solanum stenotomum
Pathway
sstn03020
RNA polymerase
sstn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125866962
09124 Replication and repair
03420 Nucleotide excision repair
125866962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125866962
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125866962
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125866962
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125866962
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
125866962
NCBI-ProteinID:
XP_049403314
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All DBs
Position
6:53535854..53541369
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AA seq
319 aa
AA seq
DB search
MEGVSYQRFPKIKIREVKDDFMKFELRETDASIANALRRIMIAEVPTIAIDLVEIEVNSS
VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV
TSKDLLSSDHTVVPVDYSDTSSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW
SPAATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTY
DDEVLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSD
DTVEADDQFGELGAHMRGG
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgtctcgtaccagaggttcccaaagataaaaatccgtgaagttaaagacgat
ttcatgaaattcgagctccgggaaaccgacgccagtattgctaacgctctccggcgtata
atgatagctgaagtacctactatagctatagacctagttgaaatcgaggtcaattcctct
gttctcaacgatgagttcatttctcatcgtttagggcttgttccgcttacaagtgaacga
gcgatgagcatgcgcttctcacgtgactgtgatgcttgtgatggtgatggacaatgtgag
tactgttcggttgagttttatctccgggtgaaatgtcttagtgaccagacgcttgatgtt
actagtaaggatttgctgagttctgaccatacggttgttcctgttgattactcggatact
tcctccagtttcgataatactcctaataagggaatcataattgtgaagctacgacgtgga
caggagttaaggttaagagctatagcacggaaaggaattggcaaagatcacgcgaaatgg
tcacctgcagcaactgtgactttcatgtatgaaccagagatctacatcaatgaggacatg
atggaatccttgactctcgaggagaaaacagaattagttgagagtagtcccacaaaagtc
tttggcattgaccctgaaaacaaacaggttattgtcgttgatcctgaggcatatacttat
gatgatgaggtgctcaagaaagctgaagccatgggaaaacctggagtggtagagatacat
gccaaggaagatagctttattttcactgttgagacaactggcgcagtcaaagcttcacaa
ttggtgctcaatgcaatagaagtgctgaagcagaagttggatgcagtacgcctttcagat
gacaccgtggaagcagacgatcagtttggagaactgggcgctcatatgcgtggaggttaa
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