Serratia symbiotica: SCc_043
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Entry
SCc_043 CDS
T01672
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-mannoheptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
ssz
Serratia symbiotica
Pathway
ssz00540
Lipopolysaccharide biosynthesis
ssz01100
Metabolic pathways
ssz01250
Biosynthesis of nucleotide sugars
Module
ssz_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
ssz00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
SCc_043 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
ssz01005
]
SCc_043 (rfaD)
Enzymes [BR:
ssz01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
SCc_043 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
ssz01005
]
Core region
SCc_043 (rfaD)
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
KR
Ldh_1_N
adh_short
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AEW44233
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All DBs
Position
66427..67356
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AA seq
309 aa
AA seq
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MIIVTGGAGMIGSNIINELNKKGYRDILVVDNLKNGTKFTNLVDLNIADYIDKEDFISSI
MAGDDLGDIEVIFHQGACSSSVEWDGKYMLNNNYKYSKDILHYCLERQIPFLYASSAAIY
GNHKQCLEESKYEEPLNVYGYSKLLFDNYVRTILPEADSLICGLRYFNVYGPREGHKGSM
ASVFFHLNNQIKCNENPKLFIGSKNFKRDFVYVSDVVSVNLWFWGNGTSGIFNCGTGHVE
SFQMVADKVIDFHQKGTVKYIEFPQKLNGRYQIHTQANLTKLRAAGYSASFKTVTEGVKE
YMDWLNSNS
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgattattgttactggtggtgctggtatgattggcagtaatattattaatgagctaaac
aaaaaaggatatcgtgatattttagtagtagataacttaaaaaatggcacgaagtttact
aatctagttgatcttaatattgccgattatatagataaagaagattttatttctagcatt
atggcaggggatgatctcggtgatatagaggtaatatttcaccagggagcctgctcttct
tctgtcgagtgggacggaaaatatatgctaaataataactataagtattcaaaagatatt
ttgcattactgtttagagcgccagataccatttctatatgcatcttctgctgctatttat
ggtaaccataaacaatgtcttgaagagagtaaatatgaagagccgttaaatgtttacggg
tattctaagttactgtttgataattacgtacgtacaatcctaccagaggctgactcgcta
atctgtggcctccgttattttaatgtctatggcccgcgtgaaggtcataaaggcagtatg
gcaagtgttttttttcacttgaataaccagataaaatgtaatgaaaacccaaaactattc
attggcagtaaaaactttaagcgtgactttgtttatgtgagcgatgtcgtatctgttaat
ctctggttctggggaaacggtacgtcaggtatttttaactgtggtactggacatgtagaa
agttttcagatggtagcggataaagttatagattttcatcaaaaaggtacagtaaaatat
attgagtttccgcaaaagctaaatggccgttatcaaatacatactcaagctaatcttact
aagctacgcgctgcaggatatagtgcgtcgtttaaaacagttactgaaggggtaaaagag
tacatggattggttaaactcaaactcataa
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