Caldimonas thermodepolymerans: IS481_08365
Help
Entry
IS481_08365 CDS
T06911
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sthm
Caldimonas thermodepolymerans
Brite
KEGG Orthology (KO) [BR:
sthm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sthm03009
]
IS481_08365 (rimO)
Enzymes [BR:
sthm01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
IS481_08365 (rimO)
Ribosome biogenesis [BR:
sthm03009
]
Prokaryotic type
ribosomal protein modification factors
IS481_08365 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
Methyltransf_2
Motif
Other DBs
NCBI-ProteinID:
QPC33139
LinkDB
All DBs
Position
1779508..1780902
Genome browser
AA seq
464 aa
AA seq
DB search
MTQDTSTAAPQAGTAPKIGFVSLGCPKALTDSELILTQLSAEGYQTSRTFEGADLVIVNT
CGFIDDAVKESLDTIGEALAENGKVIVTGCLGARTGEGGENLVQQVHPKVLAVTGPHATH
EVMEAVHRHVPKPHDPFVDLVPPAGIKLTPKHYAYLKISEGCNHRCTFCIIPGMRGDLVS
RPVGDVLNEAQRLFESGVKELLVISQDTSAYGVDVKYRTGFWNGRPVRTRMLDLVQALGD
LAEQHGAWVRLHYVYPYPHVDEVLPLMASGRILPYLDVPFQHAHPDVLKRMKRPASGEKN
LERIRRWREICPELVIRSTFIAGFPGETEAEFEYLLDFIREAGIDRAGCFAYSPVDGAAA
NELPGALPDEVREERRARFMAVAEEVSVARLQRRVGSVMQVLVDAAPAMGRKGGVGRSYA
DAPEIDGTVRLLPPEKLSKTLKVGEFTRARIVAAEGHDLVGVPV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaagacacctccacggcggcgccccaggcgggcaccgctcccaagatcggcttc
gtgagcctgggctgccccaaggcgctgaccgattccgagctgatcctcacccagctgagc
gccgagggctaccagacctcgcgcaccttcgagggcgccgacctcgtcatcgtcaacacc
tgcggcttcatcgacgacgcggtcaaggaaagcctggacaccatcggcgaggcgctggcc
gagaacggcaaggtgatcgtcaccggctgcctgggcgcgcgcaccggcgagggcggcgag
aacctggtccagcaggtccatccgaaggtgcttgccgtcaccggcccgcacgcgacccac
gaggtgatggaggcggtgcaccgccacgtgcccaagccgcacgacccgttcgtcgacctg
gtgcccccggcgggcatcaagctcaccccgaagcactacgcctacctgaagatcagcgag
ggctgcaaccaccgctgcaccttctgcatcatccccggcatgcgcggcgacctggtctcg
cgccccgtgggcgacgtgctcaacgaggcgcagcggctgttcgagtcgggcgtcaaggag
ctgctggtgatcagccaggacaccagtgcctacggcgtggacgtcaagtaccgcaccggc
ttctggaacgggcgcccggtgcgcacccgcatgctggacctggtgcaggcgctgggcgat
ctggccgagcagcacggcgcctgggtgcggctgcactacgtctatccctatccgcacgtc
gacgaggtgctgccgctgatggccagcggccgcatcctgccctacctggacgtgccgttc
cagcacgcgcatccggacgtgctcaagcgcatgaagcgcccggccagcggcgagaagaac
ctggagcgcatccgccgctggcgcgagatctgcccggagctggtgatccgcagcaccttc
atcgccggctttccgggcgagaccgaggccgagttcgagtacctgctggacttcatccgc
gaggccggcatcgaccgcgccggctgcttcgcctactcgccggtggacggcgccgcggcc
aacgagctgcccggcgcgctgcccgacgaggtgcgcgaggaacgccgcgcgcgcttcatg
gcggtggccgaggaggtctcggtcgcgcgcctgcagcgccgcgtgggctcggtcatgcag
gtgctggtcgacgccgcccccgcgatgggccgcaagggcggggtggggcgcagctacgcc
gacgcgccggagatcgacggcacggtgcgcctgctgccgcccgagaagctgtccaagacg
ctcaaggtgggcgagttcacccgcgcgcgcatcgtcgcggccgaggggcatgacctggtg
ggggtgccggtatga
DBGET
integrated database retrieval system
