Sphaerodactylus townsendi (Townsend's least gecko): 125444662
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Entry
125444662 CDS
T08213
Symbol
POLR2A
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03020
RNA polymerase
stow03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125444662 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
125444662 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stow03021
]
125444662 (POLR2A)
03400 DNA repair and recombination proteins [BR:
stow03400
]
125444662 (POLR2A)
Enzymes [BR:
stow01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125444662 (POLR2A)
Transcription machinery [BR:
stow03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125444662 (POLR2A)
DNA repair and recombination proteins [BR:
stow03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125444662 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
125444662
NCBI-ProteinID:
XP_048373172
LinkDB
All DBs
Position
LG15:complement(38007438..38033868)
Genome browser
AA seq
1965 aa
AA seq
DB search
MHGGAPSGDSACPLRTIKRVQFGVLSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDS
NNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPDVDEDITKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFILGMDPK
YARPEWMICTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEEMVKDILSNAHIQNELEREFEKMRE
DREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINTRLPSDLHPIKVVEGVKELSKKLV
IVNGDDPLSKQAQENATLLFNIHLRSTLCSRRMIEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPD
FDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDXFLLTCWVHLMVITSPFGANRQDIIGPTAKCSFEETVD
VLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNILGLGVGG
PTGMFFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGF
SPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP
TSPLYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYAQRHLV
ILPPAPVTAQRRPATAHPARSYSPNLRPEAKQPNPALKAIVPTSPSYSPTSPSYSPTSPN
YSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPS
SPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPLS
IQLLDLGQSTAPPRPSTASLVPDTLLALTRRSVYTADFLSGIQPDKPHLLADVPQVQPDY
LTYLTDLSQRPFLQVTLQLSTWLLQPNLHLSSYSSFTSSAISPDG
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcgcgccctccggggacagcgcgtgcccgctgcgcaccatcaaacgcgtg
cagttcggcgtcctgagcccggacgagatgaaaaggatgtccgtgactgaagggggaatt
aagtaccctgagacgacagaagggggtcgccccaagctggggggcttgatggaccctcgc
cagggggtcattgaaaggaccggacgctgccagacatgcgcaggtaacatgactgagtgc
cccggccattttggacatatcgaactggccaagcctgtcttccatgtgggcttcttgggc
aagacgatgaaggttctgcgctgcgtctgcttcttctgctccaagctgttggttgactct
aataatcccaagatcaaagacatcctgggcaaatccaaagggcagcccaagaagcgcttg
acccacgtctatgacctctgcaaaggcaagaacatctgcgagggaggagaggagatggac
aacaagtttggagtggagcagccggacgtagatgaagacatcaccaaggagaagggtcac
ggtggttgtgggcgttaccagccaaggatccgacgttccggcttggagctctacgctgag
tggaagcacgtgaacgaggactcccaagagaagaagatcctgctgagcccagagcgcgtg
catgagatcttcaagcgcatttccgacgaggaatgctttatccttggcatggaccccaaa
tacgcccgacccgagtggatgatctgcacggtgctcccggtccctccgctgtccgttcgg
cctgctgttgtcatgcagggctctgccagaaaccaggatgatctgactcacaaactggct
gacatagtgaaaatcaacaaccagctgcggcggaacgagcagaatggggcggccgcgcac
gtcatcgcggaagacgtgaagctgctgcagtttcacgtggccaccatggtggacaacgag
ctgcctgggctgccacgagcgatgcagaaatcagggcggcccctgaagtccctgaaacag
aggctgaagggcaaggaggggcgcgtgcggggaaacctgatgggcaagcgggtggatttc
tccgcccggacagtcatcacgccggatccaaacctatccatcgaccaggtgggcgtgccc
cgctccattgccgccaacatgacctttgctgaaatcgtgacgcccttcaatattgacagg
ctgcaggagttggtgcgaaggggcaacagccagtaccccggggcaaagtacatcatccga
gacaacggggacaggatcgaccttcggttccaccccaagcccagcgacctccaccttcag
atcggctacaaggtggaacgacacatgtgtgacggagacattgtcattttcaaccggcaa
cccactctgcataagatgtccatgatggggcacagggtccggattctcccctggtcaacc
ttccgccttaacctcagcgtgacgaccccgtacaacgctgactttgacggcgacgagatg
aatcttcacctcccgcagtccctggagacacgggccgagatccaggagctggccatggtt
ccccgcatgatcgtgacgccgcagtccaacaggccggtcatgggtatcgtgcaggacacc
ctgacggccgtccgcaagttcacaaagagagatgtgttcctagagaggggggaggtgatg
aacctcttgatgtttctttccacctgggacggcaaagtgccgcagccggccatcttgaag
cctcgccccctctggactgggaagcagatcttctccttgatcatcccgggccacatcaac
tgcatccgtacccacagcacccacccagacgacgaggacagcgggccttacaagcacatc
tctcctggggacaccaaggtcattgtggaaaacggagagctgatcatggggatcttgtgc
aagaagtcgctggggacctcggccggctccctggtccacatctcctacttggagatgggc
cacgacaccacccgcctcttctacagcaacatccagaccgtcatcaacaactggctactg
attgaaggtcacacgattggcatcggggactccatcgctgatgccaagacctaccaggac
attcagaacaccatcaagaaggccaagcaggatgtaatagaggtcattgagaaagcccac
aacaacgagctggagcccacgcccggcaacacgctccggcagacctttgagaaccaggtc
aaccggatcctcaacgatgcccgagacaagaccggctcctctgcccagaagtccctctcc
gagtacaacaacttcaagtccatggtggtgtctggggccaaagggtctaagatcaacatc
tcacaggtcattgccgtggtgggccagcagaacgttgaagggaagcgcatccccttcggc
tttaagcaccggacgctgccccacttcatcaaggacgactacggcccagagagcagaggt
tttgtggagaactcctacttggctggcctcaccccgaccgagtttttcttccacgccatg
gggggcagagaaggcttgatcgacacagccgtcaaaaccgcagaaaccggctacatccag
cgtcggctgatcaagtctatggaatcggtgatggtgaagtacgacgccacagtgcgcaat
tccatcaatcaggtggtgcagctgcgttacggggaggacggcctggctggggagagcgtg
gagttccagaacttggccactctcaagccctccaacaaggcctttgagaagaagtttaag
tttgactacaccaacgagcgggccctgcggcgcaccctgcaggaggagatggtgaaggac
atcctcagcaatgcccacatccagaacgaactggagagggagtttgagaagatgagggag
gaccgggaagtgctgagggtcatctttcccacgggagacagcaaggtggttctgccgtgc
aacttgctgcgcatgatctggaacgcccagaaaatcttccacatcaacactcggctgccc
tccgacctgcaccccatcaaagtggtggagggcgtgaaagagctgagcaagaagctggtg
atcgtgaacggggacgacccgctgagcaagcaggcgcaggagaacgccacgctgctcttc
aacatccacctgcgctccacgctctgcagccggcgcatgatcgaggagttccggctcagc
ggggaggccttcgactggctgctgggagagatcgagtccaagttcaaccaggccattgcc
cacccaggcgagatggtgggggcgctggctgcccagtcgctgggggagcctgccactcag
atgaccctgaacaccttccattacgccggggtctcggccaagaacgtgacgctgggggtg
cctcgtctcaaagagctcatcaacatctcaaagaagcccaagactccctcgctgaccgtc
ttcctgctgggccagtctgcccgggatgctgagcgggccaaggacatcctttgccgcctc
gaacacacgactcttcgcaaggtgacggccaacacagccatctactacgaccccaacccg
cagaacacggtggtggccgaggaccaggaatgggtgaacgtctattacgagatgcccgat
ttcgacgtcacccgcatttctccctggctgctgcgcgtggagctggaccgcaagcacatg
acggaccgcaagctcaccatggagcaaattgcggagaagatcaatgccggctttggggat
gatctcaactgcattttcaatgatgacaatgccgagaagctggtgttgcgaattcgcatc
atgaacagcgatgaaaacaagatgcaagaggaggaagaggtagtggataagatggacgat
gacgttttccttcgttgtatcgagtccaacatgctgacagatatgacccttcaaggcatc
gagcagatcagcaaggtgtacatgcacctgccccagacagacaacaagaagaaaatcatc
atcaccgaggacggggagttcaaggccttgcaggagtggatcttggagacggatggcgtg
agcctcatgcgggtgctgagcgagaaggatgtggaccccgtgcgcaccacctccaacgac
atcgtggagatcttcacggtgctgggcatagaggccgtgaggaaggccttggagagggag
ctgtaccacgtcatctcttttgacggctcctacgtcaactatcgccatctggcgctgctc
tgtgactaatttctgctgacgtgctgggtgcatttgatggttatcacttcgccatttggc
gctaaccgccaagacattatcgggcccacggcgaagtgttcctttgaggagacggtggac
gtcttgatggaagcagccgcgcatggcgaaagcgaccccatgaagggcgtctcggagaac
atcatgctgggccaacttgcccccgccggcaccggctgcttcgaccttctcttggacgca
gagaagtgcaaatacggcatggagatccccacaaacatcctcggcctgggagtgggcggc
cccactggcatgttctttggctcggctcccagccccatgggtggaatgtcccctgccatg
actccgtggaaccaaggtgccacgccagcatatggagcatggtccccaagcattggtagc
ggaatgaccccgggtgctgctggattttctcccagcgctgcctcagacgccagcggcttc
agtccaggctattctccagcctggtctccgactcccggctctcctgggtctcccgggcct
tccagcccgtacatcccttcgccaggtggagccatgtctcctagttattccccaacgtct
cctgcttacgagccccgttcgcctggggggtatacaccacaaagccccagctacagcccc
acgtctcctttgtacagcccaacatctccctcgtactctcccacaagcccaaattacagc
ccaaccagcccaagctacagccccacatcgcccagctacagcccaaccagccctagctac
agcccaacgtcaccgagctatagcccaaccagcccgagctacgcccaacgtcacctagtt
attctcccaccagccccagttacagcccaacgtcgcccagctacagcccatccagcccga
agctacagcccaaatctcaggcccgaagctaagcagcccaatccagctctgaaagctata
gtcccgacgtcaccgagctacagcccaacatctccgagctacagccccaccagccccaac
tacagtccgacatctccaaattacaccccgacttctcctagctacagcccgacatctccc
agctacagcccgacatctcctaattacacacctacttctccaaactacagcccgacttcc
cctagctattcgcccactagcccctcctacagcccgacttcgcccagctattctccctcc
agccctcgctacaccccacagtcacccacttacaccccctcatcgcccagttacagcccc
agctcccccagctacagcccaaccagccccaagtacaccccgacaagcccgtcttacagc
cccagctccccagaatacaccccgacatcccccaaatacagcccaaccagccctctaagt
atacagctcctcgacctcggccaaagtacagccccaccacgcccaagtacagcctcacta
gtcccggacactctactcgcattgacgcgtcgctctgtctatactgccgactttctctcc
ggcatacagcccgacaagccccacttactcgccgacgtcccccaagtacagcccgactac
cttacctatctcactgacctctcccaaaggccattcctacaagtgactctccaactctcc
acctggttgctacagcccaatcttcacctatcatcgtacagctccttcaccagctccgcc
atcagtccagacggctga
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integrated database retrieval system
