Sphaerodactylus townsendi (Townsend's least gecko): 125444870
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Entry
125444870 CDS
T08213
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125444870 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stow03021
]
125444870 (POLR1A)
Enzymes [BR:
stow01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125444870 (POLR1A)
Transcription machinery [BR:
stow03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
125444870 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
125444870
NCBI-ProteinID:
XP_048373560
LinkDB
All DBs
Position
LG15:complement(3492224..3548991)
Genome browser
AA seq
1628 aa
AA seq
DB search
MAAARESPWRRLSGLSFGVYRAAEIGKLSVKSITNPNFLDNAGTALPNGLYDLALGPLQN
KEVCATCMQGFNDCPGHLGHTELPLTVYNPLFFDKLFLLIRGSCLRCRHLTCPRSVIHLL
LNQLKLIKVGLVEAVYDLEAVLSRFLEENASAPEVDIEEALSKHTEEILQNNRLMEQGSH
VKNVCECRSKLISQFWKLHTSSKRCPRCKAERSLVRKEHNSKLTVNYPSMAIQKSGKPVI
VEEAAAIDETQLGKRGYLTPSTAKEHVEALWKNEGFFLSKIFSGVMVSGDSSFNPEIFFL
DKLVVPPSRYRPVSCVGDQMFANGQTVNLQAVMKDAQVARKLLAIMAQDLKLSMQTEEGD
LPKPVEQPTELLDRSVLVTLPGQTMADKLNNIWIRLQSHVNILFDSDMDRLMSEKFPGVR
QILEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVH
ELRKAVINGPDVHPGASMVINEDGSRTVLSAASQTQREAIAKQLLTPSTGTPKPGIKTVC
RHIKNGDVLLLNRQPTLHRPSIQAHRARILPDEKVLRLHYANCKAYNADFDGDEMNAHFP
QNELGRAEAYTLACTDEQYLVPKDGKPLAGLIQDHMVSGTSMTMRGCFFTQEQYMELVYQ
GLTDKKGRVKVLPPAIIKPQHLWTGKQVVSTLLANVIPEDWPPLNLSGRAKIDGRAWGAA
SKPGIYRSGLKFMCESQVIIRNGELLCGVLDKAQYGSSAYGLVHCCYEVYGGETSGKVLT
ALARLFTAYLQFYRGFTMDVEDILVKPQADHRRQQIMKDCASCGKKTIKAAFNLLETSTC
EQAKGKWQDAHLDKDRRNFNVVDLKFKEEVNRYNNEINKVCMPLGLHRSFPENNLQLMVQ
SGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQSYDFSPRSGGFVTGRFLTGI
KPAEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLIVHYDLTVRDSDGSIVQFLY
GEDGLNVPKIQFLQPKRFPFIVDNYKIIEKSKHLDEVLVKTDPWRAKEQFSAIKRWRVRH
QQPVRKGGFLLFSQKKMANVTAQIPSGELINGREPKTLQLLQMWYGLKEKRRSKYQKKAT
KCPDPCLGIWQPDICFASVSETFENDVENFLTEWNSRNKLSCCPSEISPERLKDLLHLKW
QQSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIK
TPMMSIPVLDTKSAHKRVKKLKKRLTRVCLGEVLHKVDIQESVCLENKQSNHRIFTIRFT
FLSYECYCEEFCVKPGDILNFMETSFFRILLETIKRKTSKLVSYNSVSTQRANHRDVGGG
DGEVGASHENQDDLEEQEEGRVLDGEIDEGDADATDTRRREKQEEEVDYESDEGAVEEDE
IPDKEEAAASCDSGRDPETTEAQPDPSAPSSSQQVQTKSKTLSKSAHYRVNSVRESHPAI
QSYAYDTKNELWCEVSLKLPLSKEYFNLASLLTSLANKTVIHETKRITRCLLNETTDTDK
GKVLTLQTEGINLPELFQYTEVCNETTVGASCGVKEKETQHFQEDWLLCEVYLVTFSKKM
SYSAGCSC
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgccagggagtccccgtggcgccggttgagcggtctgtcgttcggcgtgtac
cgggcggcggagatcgggaagctgagtgtgaaatcaataaccaaccctaatttcctggat
aacgctggcaccgctttgcccaatggattgtacgacttggctttgggacctctccaaaac
aaggaagtgtgcgcaacttgcatgcagggcttcaacgactgcccagggcacctgggccac
acagagctgcctctcacggtctataatcctctctttttcgataaactgttccttctgata
cgaggttcctgcttgaggtgccgccatctgacctgtccacggtctgtgattcacttactg
ctgaatcagctgaagttgataaaagtcgggctggttgaagccgtctatgacctggaggct
gtcctaagcaggtttttagaggaaaatgccagtgcaccagaggtagacatagaagaagcg
ttaagcaagcacacagaagaaattctccaaaataaccgtctaatggaacagggttcacat
gtaaaaaatgtgtgtgagtgcagaagtaaattaatctcccaattttggaaattacacaca
agttcaaagagatgtcccaggtgcaaagctgaaagatcacttgtccgaaaagagcataac
agcaaactgactgtgaattacccctctatggcaatccagaagtcaggcaaaccagtgatc
gtggaggaagcagcagccatagatgaaactcaactgggaaaacgaggctacctgacgccc
agcactgccaaagaacatgttgaagctttgtggaaaaatgaaggttttttcctcagcaaa
attttctctggtgtgatggtcagtggagattcaagtttcaatcctgagatattcttcctg
gataaacttgttgttccaccatctagatatcgccctgtgagttgtgttggagaccagatg
tttgcaaatggtcaaacggtgaacttgcaagctgtcatgaaagatgcccaggtggcacgg
aaacttctggctatcatggctcaagatctgaagctgtcgatgcaaactgaagagggagac
ctcccgaagccggtggagcagccaacggagctcctggaccgttctgtcttggtgactctc
cccgggcagacgatggcagataagctgaacaacatctggattcgtcttcagagccatgtc
aatattttgtttgacagtgacatggacaggctcatgtcagaaaaattccctggagtgcgg
cagattttggaaaaaaaggaaggcctgttccgcaaacatatgatgggcaagcgagtggat
tatgcagctcggtcagtcatttgccccgacatgtacattgggaccaatgagattggcatt
cctatggtctttgctaccaaactgacctatcctcaacctgtgaccccatggaatgtccat
gaactgaggaaagctgtcattaatgggcctgatgtccacccaggtgcctccatggtcatc
aacgaggatggttctcgcacagtcttgagtgcagcgagccagacccaaagagaagccata
gccaagcaactgttaactccttccaccgggacaccaaaaccagggataaaaactgtgtgc
cgtcatattaaaaatggagatgtccttttgctgaatcgccagcccaccctccacagacct
tccatccaagctcatcgagcccggattctgcccgatgagaaggtgctgaggcttcactat
gccaactgcaaagcctacaacgctgacttcgacggggatgaaatgaacgctcacttccct
cagaatgagctcggccgggcggaagcctacaccctggcttgcacggatgagcagtatctt
gttccaaaggatgggaagccattggcaggcttgatccaggatcacatggtctccggcacc
agcatgaccatgcgaggctgcttctttacccaagaacagtacatggaactggtgtatcaa
gggctgaccgacaagaagggaagagtgaaagttctgcctccagctattataaaaccgcag
catttgtggacaggaaagcaggttgtttctacgttgctggcaaacgtaattccagaggat
tggcctccgctgaatttgtcagggagagctaaaattgatggaagagcctggggggcagca
tctaaacccggcatttaccgatcgggtctcaaatttatgtgtgaatctcaggttatcatt
cggaacggggagctgctgtgtggggtcttggacaaagcgcaatatggcagctctgcctat
ggtctggtccattgctgctacgaggtctacggtggggagaccagtggaaaggtgctgacg
gctctggctcggctcttcacagcttacctgcagttctacaggggctttacaatggatgtt
gaggatattttggtcaaaccgcaagcagaccatagaagacagcagatcatgaaagactgt
gcctcgtgtggtaagaagaccatcaaagctgcatttaacttgctggagacttcaacctgt
gagcaggccaaggggaagtggcaggacgctcacctcgacaaggaccggcggaactttaat
gtcgtcgatctgaaattcaaagaggaagtgaaccgttacaacaacgagattaacaaggtg
tgcatgcctcttggtcttcaccggagcttcccagaaaataatttgcagttgatggtacag
tcaggagccaaaggatcgactgtgaatactatgcagatttcttgcttgctgggccaaatt
gagttggaaggtcgaaggcctccgttgatgccatctggcaaatcgttgccctgtttccag
tcttacgacttttcccccagatcaggggggttcgtgacggggagatttctcacgggcatc
aagcctgccgaattcttcttccattgtatggctggtcgagagggactggtggatacagct
gtcaaaaccagccgatctggataccttcaaagatgcatcataaagcatttggaagggctg
atagttcattatgacctgactgtacgggacagcgatggcagcatcgtgcagtttctctac
ggagaagatggcttaaacgttcccaaaatacagttcctgcagcccaagcggtttcctttc
attgtagataactacaagataatagagaaatctaaacatttagatgaagttctggtaaaa
acagacccttggcgtgcgaaggaacagttcagcgctatcaagaggtggcgagtcagacac
cagcagccggtcagaaaaggaggttttttgctgttttctcagaaaaagatggcaaatgta
accgcgcagatccctagtggagaactcataaatggacgagagcctaaaactctgcagctg
ttgcagatgtggtacggactgaaggagaaaagacgaagcaagtatcagaaaaaggcaaca
aaatgccccgatccttgtctgggaatctggcagccggacatctgttttgcatccgtgtca
gaaacatttgaaaacgatgtagagaatttcctcacagagtggaactctcggaacaagctc
agctgttgtccgtctgaaatttctccagagagattaaaggacttgctgcatctaaagtgg
caacagtccctctgtgacccaggagaagctgtgggtcttcttgctgctcagagcattggg
gagccctccacacagatgacgctcaacaccttccacttcgctggacgcggcgaaatgaac
gtcacactcggtatcccaaggttgcgggaggtcctgatggtcgccagcgctaatattaaa
acccccatgatgagcattcctgtgctggacaccaagagcgctcacaagagagtgaagaag
ctgaagaaacggctcaccagggtgtgcttaggcgaggtgttacataaagtggatattcag
gagtccgtgtgtttggagaataagcaaagcaatcatcgcatcttcacaatcagatttact
tttttgtcgtatgaatgttactgtgaagagttctgtgtgaagccgggggacatcttaaac
tttatggagacaagtttcttcagaatcttactggaaaccattaagaggaagacttcaaag
ctggtctcatacaacagtgtcagtactcaaagagcaaatcacagggacgtaggtggtggt
gatggggaagtcggagcatcccatgaaaaccaggatgaccttgaagagcaggaagaaggg
agagttcttgatggtgaaattgatgaaggggatgctgatgccacagatacaagaagaagg
gagaagcaggaggaggaggtcgattatgagagcgatgaaggggctgtggaggaggacgaa
atcccggataaggaagaggcggcggcctcgtgtgacagtggcagggatccagaaacaacg
gaagctcagccggacccttctgctccttcctcgagccagcaggttcagaccaagagcaag
accttgagcaaatcagcccattacagagttaatagcgtgcgggagagccacccggctatt
cagagctatgcgtatgacacgaaaaatgagctgtggtgtgaggtttctttgaagcttcca
ctgtcaaaggaatacttcaacctggcctccttgctgacttccctggcaaacaaaacagtc
atccacgagaccaagaggatcacgcgatgtctcttaaatgaaaccacagacacagacaaa
gggaaggtgctcactttacagactgaggggataaacctccctgaactcttccaatacact
gaggtatgtaatgaaacaaccgtaggtgcttcctgtggtgtgaaagagaaggaaacccag
cacttccaagaagattggctgctctgtgaagtctatcttgtgacattttctaagaaaatg
agctattcagcaggttgttcatgctaa
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integrated database retrieval system
