Salmo trutta (river trout): 115173310
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Entry
115173310 CDS
T08542
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit-like isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
stru
Salmo trutta (river trout)
Pathway
stru04010
MAPK signaling pathway
stru04210
Apoptosis
stru04218
Cellular senescence
stru04620
Toll-like receptor signaling pathway
stru04621
NOD-like receptor signaling pathway
stru04622
RIG-I-like receptor signaling pathway
stru04623
Cytosolic DNA-sensing pathway
stru04625
C-type lectin receptor signaling pathway
stru04920
Adipocytokine signaling pathway
stru05132
Salmonella infection
stru05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115173310
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
115173310
04218 Cellular senescence
115173310
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
115173310
04621 NOD-like receptor signaling pathway
115173310
04622 RIG-I-like receptor signaling pathway
115173310
04623 Cytosolic DNA-sensing pathway
115173310
04625 C-type lectin receptor signaling pathway
115173310
09152 Endocrine system
04920 Adipocytokine signaling pathway
115173310
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115173310
09171 Infectious disease: bacterial
05132 Salmonella infection
115173310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115173310
Transcription factors [BR:
stru03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
115173310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
115173310
NCBI-ProteinID:
XP_029587160
Ensembl:
ENSSTUG00000031620
LinkDB
All DBs
Position
3:32700459..32739356
Genome browser
AA seq
943 aa
AA seq
DB search
MAEEEAYLPHPQYYDIEPIWDPLNFPPMSLTNSLRTADRPYLQIIEQPKQRGFRFRYGCE
GPSHGGLPGASSEKNRKSYPQVKICNYQGLARVVVQLVTNSKDAHLHAHSLVGKQCDKGI
CITDLQPKDCSISFPNLGILHVTKKNVSKTLEDRMTEAYRMGYNCGIVIHPEIDTIQGEV
RIPRELTDHQRSMICSAATKQAKEMDLSVVRLMFTAFLPDSDGGFSRRLDPVISDPIFDS
KAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDETGLTWEAFGDFSP
TDVHRQFAIVFKTPKYRDLNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKEEVQRK
RQKTLPNFQDYNGQGGAGGMYRGPGGGGSATGGGPGSGGGGYFQAYSTYNNYGAGYNAGF
SPGMSGGGAGIKHATQGRAEDSGDDSDMGDDPSLGAVVADRAQSEEDASAGETSEERGAG
VELGPGDRTGGAPNREISIVISQKCVLEARLVDVAERQAEALFHYAVTGDVRYLMAPQRH
LMTAQDENGDTGLHLGVIHSQTDAVRSLAQVLSALPGEEVLNMRNDLYQTPLHLAVITQQ
KEAAEALVLAGADVTLSDRHGNTALHLATQQKEGGMVGFLLRHREVVELVDLPNTAGFCS
LHLAVLANSLCSLRDLLVSGGNVEVQERSCGRTALHLATELDNVSLAGCLLLEGNADVDC
CTYNGSSPLHIAAGRGSVKLTALLMAAGANPHKENFEPLFFREDDCYVDEEEEQDEGYIP
GMTPLNMAATPEVLEILNGKEYKPETTIPVFIPPQGDMRSLGSDTKRALCQALECQGGSW
ESLANTLGLGILNSAFRLSPSPASTLLDSYEVSGGMVKDLLEGLRTVDNSTALTVLQGAL
CETEQAPLAPQSTTELLGRVQDLKLDGQEDSGVCDSGVELSTA
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaggaggcttacctgcctcacccacagtactatgacatagagccaatatgg
gatcctctgaatttccctcccatgtcactcaccaactcactccggacagcagatagaccc
tacctccaaatcattgaacagcctaaacagcggggcttcaggttccgttatgggtgtgag
gggccctctcacggtgggcttccaggggcctccagcgagaagaacaggaagtcatatccc
caggtcaagatctgtaactaccaggggttggcacgtgtggtggtacagctggtgaccaac
tctaaagatgcccacctccatgcccacagtttggtgggcaagcagtgtgacaagggcatc
tgcatcacagacctacagcccaaagactgcagcatcagtttccccaacctgggcatcctc
cacgtgaccaagaagaatgtgagtaagacactggaggaccgtatgactgaggcctacagg
atgggttacaactgtggtattgtcatccaccccgagatagacaccatccagggagaggtc
cgcatcccccgggagctcactgatcaccagagaagcatgatctgcagtgcagcaaccaag
caggctaaagagatggatctaagcgtggtgcgcctcatgttcacagccttcctcccagat
agtgacgggggcttctcccgtagactggaccccgtcatatcagaccccattttcgacagc
aaagctcctaatgcatccaacctgaagattgtgcggatggaccgcacagctggctgtgtg
acaggaggagaagaggtctacctgctctgtgacaaggtccagaaagatgacatccaggta
cgcttctatgaggatgacgagacagggctgacatgggaggcctttggggacttctccccc
actgatgtccatcgacagtttgccattgttttcaagacccccaaatacagagacctgaac
ctccagaagcccacctcagtgtttgtgcagctgaagcgtaaatcggacaacgagacgagc
gagcccaagcccttcacctaccacccacagatcatagataaggaagaggtgcagaggaag
agacagaagaccctgcctaatttccaggactacaacggccaaggtggagcagggggcatg
taccggggacctgggggaggaggctccgctacggggggaggacccggctcagggggagga
ggttacttccaggcctattccacctacaataactacggcgccggctataacgccggcttt
tcccctggcatgagtggtggcggggcgggcattaaacatgctacacagggcagagcggag
gacagcggtgatgacagcgacatgggcgatgacccgtccttgggggcagtggtggcggac
cgagcccagtcggaggaggatgcctctgccggggagacaagtgaggagagaggggctggt
gtggagctaggaccaggggacagaactggcggtgcgcccaacagggaaattagtatagtg
attagccagaaatgcgtgctggaagccaggctggtggatgtggctgagaggcaggctgaa
gccctcttccattacgccgtcactggagacgtccgctacctgatggctccacagcgccac
ctcatgacggctcaggacgagaacggcgacactggtctccatctgggggtgatccacagc
cagacagacgcagtcaggagtctagcccaggtgctctctgccctgcctggagaggaggtc
ctcaacatgaggaatgacctctaccagactcctttgcacctagcggtgataacccagcag
aaggaggcggccgaggccctcgtattggctggggctgatgtaactctgtctgatcgccac
ggaaacacagctctacacctggccactcagcagaaggagggagggatggtgggatttcta
ctaagacacagagaggtggtggaactagtggacctccccaacacagcaggattttgctcc
ctccacctggctgtgctggccaacagcctatgttccctcagggacctcctggtgagcggg
ggcaatgtggaggtccaggagaggagctgcggccgcacggcactccacttggccactgag
ctggacaatgtctccctggcaggctgcctgctattggaggggaatgctgatgtggactgc
tgcacctacaacggctccagccctctccacatagcagcaggccggggctctgtcaaactg
accgctctcctcatggctgcaggtgccaatcctcacaaagaaaactttgagcccctgttc
ttcagagaggatgactgctatgtggatgaggaagaggagcaggatgaaggctacatccca
gggatgactcctcttaacatggcagccactcctgaggtgttggaaattctgaatggcaaa
gagtacaagccagagaccaccatcccagtcttcatcccccctcaaggcgatatgcggagc
ctgggctcagacacaaagcgggcattatgccaggcccttgagtgccagggggggagctgg
gagagcctggcaaacacgctggggctgggcatcctcaacagcgccttcagactcagcccc
tcccccgccagcacactgctggacagctatgaggtgtccgggggaatggtcaaggacctt
ttggagggactcaggacggtggataactccaccgctttgacagtactgcagggggcactg
tgtgaaacagagcaggctcctctagctccccaaagcaccacagagctcttaggacgtgtc
caggatctgaagctggacggacaggaggacagcggcgtgtgtgacagtggggtggagctc
tccacagcgtga
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