Salmo trutta (river trout): 115190214
Help
Entry
115190214 CDS
T08542
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03020
RNA polymerase
stru04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115190214
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
115190214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115190214
Enzymes [BR:
stru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115190214
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
115190214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Bromo_TP
DUF3654
Motif
Other DBs
NCBI-GeneID:
115190214
NCBI-ProteinID:
XP_029604572
Ensembl:
ENSSTUG00000046028
LinkDB
All DBs
Position
Unknown
AA seq
1402 aa
AA seq
DB search
MVKEQFRETDVAKKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDTSHTPLPYGVLDHRM
GTSEKDRPCETCGKNLADCLGHYGYLDLEMPCFHVGYFKAIIGILQMICKTCSHIMLTKE
EKLQFMDVLKRPGLAYLQKRGMKKKISDKCRKRTMCLNCSTLNGPVKKCGLLKILHEKYK
TTKKVVDTVVSDFLNSFDIAIEHNKEVEGLLNRAQENLSPLVVLNLFRRIPAEDIPLLLM
NPEAGKPADLILTRLLVPPLCIRPSVISDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANLEMLRKLVRSGPEVHPGANF
IQQRHTQMKRFLKYGNREKMAQELRFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIAKV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
AIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGVDERIKIALPHPAILKPMTLWTGKQI
FGLILKPSKACPVKANLRTKGKQYSGKGEDLCSNDSFVVIQNSELMCGTMDKGTLGSGSK
KNIFYILLRDWGQLEAANAMSRLARIAPTYLSNRGFSIGIGDVTPGQGLLKAKQDLLDGG
YAKCDEYIEALKTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKTNSPLIM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQF
VYGGDGLDPAAMEGKDEPLEFNRVLDNIRSVHTCSEQPALSKNELVLTAESIMKRSDFKC
CRDSFLEALTDTGSEKYMEEIKKFIKATSEKIKKTRDKYGINDNGTTEPRVLYQLDRITP
SQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVP
RIKEIINASKNISTPIISAHLDVDDDADFGRLVKGRIEKTLLGEISEYIEEVFLPDDCFI
LVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDIAVHGEAVVCVSPRENSKSSMYYV
LQSLKDNLPKVVVQGIPEVSRAVIHIDEQTGKNKYKLLVEGDNLRSVMATHGVNGNRTTS
NNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGL
AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADK
DPTPPRRPLLFDSADFHIPLVT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaagagcagtttagagagactgatgtggccaaaaaaataagccacatctgtttt
gggatgaagtcggctgagcagatgagacagcaggctcatatccaagtggtcagtaagaac
ctgtacagccaggacaccagccatactcctctaccatacggagtactggatcatcgcatg
ggcaccagtgagaaggatcgtccatgtgagacgtgtgggaagaacctggctgactgtctg
ggacactatggatatctggatctggagatgccctgttttcatgtgggctatttcaaagcc
atcattggaatcctacagatgatctgtaagacgtgttctcacatcatgctgaccaaagag
gagaaactacagtttatggatgtgttgaagaggccgggcctagcgtacctccagaaacga
ggaatgaagaagaagatatccgacaaatgccgcaaaaggacaatgtgtctcaattgctcc
acgttaaatggaccagtgaagaagtgtggcttgctaaagatcctccacgagaaatacaag
acaaccaagaaagtggtggacactgtagtatcagactttctcaactcattcgatatcgca
atagaacacaacaaagaagtggagggcttgcttaacagggctcaggagaacctgagtcct
ctggtggtgttgaacctgttcaggaggattccagcggaggacattcccctgctcctgatg
aaccctgaggcaggtaagcctgcagacctcatcctcacccgtctgctggtacccccactc
tgcatccgcccctctgtcatctcagacctcaagtcaggtactaacgaggatgacctcacc
atgaagctcacagagatcatcttcctcaatgatgtcatcaagaagcaccgtatgtcaggg
gccaagacccagatgatcatggaggactgggacttcctccagctgcaatgtgctctctac
atcaacagtgagctctctggcatccccctcaacatggcccctaagaagtggaccagaggc
ttcgttcagagactcaagggcaaacaagggcgattccgtggaaacctctcggggaagaga
gtggatttctctgggagaacggtcatctctccggaccccaacctgcgaatcgatgaggtg
gctgtccctgtgcacgtagccaaaatcctgacctacccagagaaggtgaacaaggccaac
ttggagatgctgaggaagctggtgcgtagcggtcctgaggtccaccctggagccaacttc
atccagcaacgacacacgcagatgaagaggtttctgaagtacgggaaccgagagaagatg
gcccaggagctgaggtttggagacgtggtggagagacacatgatcgatggagacatcgtc
ctcttcaaccgacagccctctctacacaaactcagcatcatggctcatattgccaaagtg
aagcctcacagaacgttccggttcaacgagtgtgtgtgcacgccgtacaacgctgacttt
gacggggacgagatgaaccttcaccttccccagacagaggaggccaaggctgaagccctg
gtgctgatggggaccaaagccaacctggtgacccccagaaacggagagcctctgattgct
gctattcaagactttctgacaggagcctacctgttgaccctgaaggacactttcttcgat
aggtctaaagcctgccagatagtggcctctatcctggtgggggtagatgagaggatcaag
atagctctcccacaccctgccatactcaagcccatgactctgtggacagggaagcagatc
tttggtctgatcctgaagcccagtaaggcctgtccagtcaaggccaacctgaggaccaag
gggaaacagtacagtggcaaaggagaggacctctgcagcaacgactccttcgtggtgatc
cagaacagtgagttgatgtgtggtaccatggataagggcacgctgggctctggctccaag
aagaacatattctacatcctgctgagagactgggggcagctggaggcagccaacgccatg
tctcgcctggcccgcatcgcacctacatacctctccaatcggggtttctccatcggtatt
ggtgacgtgaccccaggccagggtctgttgaaggccaaacaggacctgctggatggaggc
tatgccaagtgtgacgagtacatcgaggccctgaagactggcaaactgcagcaacagcca
ggctgcacggctgaggagacgctggaggccctcatcctgaaggagctatctgttatcaga
gaccatgccggcagcgcctgcctcagagaactggacaaaaccaacagtcctctgattatg
gctctgtgtggctccaaaggatccttcatcaacatctcccagatgattgcctgtgtgggc
cagcaggctataagcggctctcgagtgcccgacggctttgagaaccgctcgctgccacac
tttgagaagcactctaaacttcctgcggctaaaggctttgtggctgacagcttttattca
ggcctgacgcccacggagttctttttccacactatggctggtcgagagggcttggtggac
accgctgttaaaacagcagagaccggatacatgcagagacgtctggtgaagtcgttggag
gacctgtgttcccagtatgatctgacggtacggagctccactggtgacatcatccagttt
gtctatgggggggacggcctggacccggccgccatggaggggaaagatgaaccgctggag
ttcaacagagttctggacaacatccggtcggtccatacgtgttcagagcagccagccctt
agtaagaatgagttggtcctgacagcagagtccatcatgaagaggagtgacttcaagtgc
tgccgagacagcttcctcgaggccttgacagacacgggctcagagaagtatatggaggag
atcaagaagttcatcaaggctacatctgagaaaatcaagaagaccagggacaaatatggc
atcaacgacaatggcaccacagagcccagagttctgtatcagttggaccgcatcactccc
agccagctagagaagtttctggagacctgcagggacaagtacatgagagctcagatggag
ccgggctcagcagtaggagccctgtgtgcccagagcattggggagcctggcacccagatg
accctgaaaaccttccactttgctggggtagcctccatgaacatcaccctgggggtccca
cgcatcaaggaaatcatcaacgcctccaagaacatcagcacacctataatcagcgctcac
ttggatgttgacgacgatgcagactttggccgactggtgaaagggaggattgaaaagacc
cttctgggagagatttcagagtacattgaagaggtgtttttgccagacgactgtttcatt
ctggtcaagctgtcactggagaggatcagactgctgcgactagaggtgaatgcagagaca
gtccgctactctatctgcatgtctaagctgagagtgaagcctggagacatagctgtacac
ggggaggcagtggtctgtgtatctcccagggaaaacagcaagagctccatgtactacgtc
ctccagtctctaaaggataacctgcccaaggtggtggtacagggtatccctgaggtgtcc
agagctgtcattcacatcgacgagcagaccggcaagaacaagtacaagctgctggttgag
ggagacaacctacgcagcgtcatggcaacccacggtgtcaacggcaacaggaccacctca
aacaacacctatgaggttgagaagacgcttggtatcgaggctgccaggtccaccatcatc
aatgagatccagtacaccatggtgaaccacggcatgagcatcgacaggcgacacgtcatg
ctcctggcagacctcatgtcctataagggtgagatcctaggtatcaccaggtttggcctg
gctaagatgaaggagagcgtgttgatgctggcgtcctttgagaaaactgccgaccatctc
tttgatgctgcgtactttggtcagaaggactcagtctgtggtgtatcagaatgcatcatc
atgggaatccccatgaacatcggtacaggactgttcaagctcttacacaaggctgataag
gaccccacgccacccaggagacccctgctcttcgacagcgccgacttccacatccccttg
gttacatag
DBGET
integrated database retrieval system
