Salmo trutta (river trout): 115194168
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Entry
115194168 CDS
T08542
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03020
RNA polymerase
stru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115194168
09124 Replication and repair
03420 Nucleotide excision repair
115194168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115194168
03400 DNA repair and recombination proteins [BR:
stru03400
]
115194168
Enzymes [BR:
stru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115194168
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
115194168
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
115194168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
115194168
NCBI-ProteinID:
XP_029609486
Ensembl:
ENSSTUG00000047363
LinkDB
All DBs
Position
5:41574736..41591678
Genome browser
AA seq
1967 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEHDSEDITKEKGHGGC
GRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPKFSR
PEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIA
EDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSAR
TVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNG
DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTFRM
NLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA
VRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIR
THSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMGHDV
TRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNE
LEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQV
IAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGR
EGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQ
NMATLKPSNKAFEKKFRYDCTNERALRRTLQEDVVKDVMTNAQVQSALEREYEKMKEDRE
ILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVQGVQELSKKLVIVN
GEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIAHPG
EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLL
GQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPDFDV
TRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS
DENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITE
EGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELNH
VISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASS
HGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFG
AAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYSPA
WSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSP
TSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPSSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY
SPSSPRFTPQSPNYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTS
PKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKYS
PTSPTYSPTSPKGSTYSPLSPGYSNPSPSFTLTSPAISPDDSDEENN
NT seq
5904 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtctgtcacagaagggggaatcaag
taccccgagaccacagaaggagggcgtcccaaactcggtgggctgatggaccccagacaa
ggggtcatcgaacgatccggaaggtgtcaaacatgtgcaggtaacatgacagaatgccca
ggccacttcggccacatagagctggcgaagcctgtgttccacgtgggctttgtcaacaag
attatgaaggtcctccggtgtgtctgctactcctgttccaagctgctggtcgacacgaat
aatccaaagatcaaagacatcctgcagaagtccaaggggcagcccaggaagcgtctgacc
cacgtgtatgacttgtgtaaaggcaagaacatctgcgagggcggagaggagatggataac
aagtttggagtggagcacgacagtgaggacatcactaaggaaaagggccatggtggctgc
gggcgctaccagccgcgtatccgccggtcgggcctggagctgtacgccgagtggaagcac
gtgaacgaggactcgcaggagaagaagatcctgctgagccccgagcgtgtctacgagatc
ttcaaacgcatctcggacgaggaggacgtcatcctgggccttgatcccaagttctcccgg
cccgagtggatgattgtcacggtactccctgtgccgccgctagctgtccggcccgccgtc
gttatgcagggctccgcccgtaaccaggacgacttgacacacaagctggccgacatagtc
aagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccacgtcatcgct
gaggacgtgaagctgctgcagttccacgtggccaccatggtggacaacgagctgccaggc
ctgcccagggcaatgcaaaaatcgggccgcccgctcaaatccttaaaacagcgtctgaag
gggaaggaggggcgagtccgaggtaacctgatggggaaacgtgtggacttctccgcccga
accgtcatcacccccgaccctaacctgcagatcgaccaagtgggcgtcccgcgctccatc
gccgccaacatgactttcccagaaatcgtcacaccctttaacattgacaggttacaggag
ctggtgcgcagaggcaacagccagtatccaggagccaaatatatcatccgagacaacggg
gacagaatcgacctgcggttccaccccaaaccaagtgaccttcacctccagatcggctac
aaggtggaaagacatatgtgcgacggtgacatcatcatcttcaacagacagcccacttta
cataaaatgtctatgatggggcacagagtccgaatccttccctggtccaccttccgaatg
aacctcagtgtaaccactccgtacaatgctgacttcgacggggatgagatgaacctgcat
ctccctcagtccctggagacgagagctgagatccaggagcttgccatggtgcctcgtatg
atcgtcaccccccagtccaacaggcccgtcatgggcatcgtgcaggacaccctcaccgcc
gtgcgcaagttcaccaaaagggacgtcttcctagagaggggcgatgtgatgaacctcctg
atgttcctgtccacttgggacggcaaggtgccccagccagccatcctgaagccccggcca
ctctggactggcaagcagatcttcagccttatcatcccgggccacatcaacgccatccga
acacacagcacccacccagacgaggaggacagtgggccctacaagcacatttctcctggg
gacaccaaggtgatagtggagaacggggagctgatcatgggcatcctgtgtaagaagtca
ctgggtacctctgctggctccctggtccacatctgtttcctggagatgggccacgacgtc
acccgcctcttctactccaacatccagacggtggtcaacaactggctgctcattgagggt
gcctctatcggtattggtgactccattgctgatgcaaagacgtacctggacatccagaac
accatcaagaaggccaaacaggatgtaatagaggtcattgagaaggcccacaacaacgag
ttggagcccacccctggcaacacgctgaggcagacctttgagaaccaggtgaatcgcatc
ctaaacgacgcccgtgacaaaaccggttcctccgcccagaagtccctgtctgaatacaac
aacttcaagtctatggtggtggccggctccaaaggctccaagattaacatctctcaggtt
attgcggtggtggggcagcagaacgtggagggtaagcgtatccccttcggcttcaaacac
cgcacgctcccccacttcatcaaggatgattatggccctgagagcagaggcttcgtggag
aactcatacctggccggcctcacgcccacagagttcttcttccacgccatgggaggcagg
gaggggcttatcgacacggctgtgaagaccgccgagactggttacatccagcgtcgtctg
atcaagtccatggagtctgtgatggtgaagtacgacgccacggtgaggaactccatcaac
caggtggtgcagctgcgctacggagaggacggcctggccggggaggctgtggagttccag
aacatggccacgctcaaaccctccaacaaggccttcgagaagaagttcagatatgactgc
accaacgagcgggctctgaggcgcaccctgcaggaggacgtggtgaaggacgtgatgacc
aacgcccaggtgcagagtgccctggagagggagtatgagaagatgaaggaggacagggag
attctgagggccatcttccccactggggacagtaaggtggtgctgccgtgcaacctggcc
aggatgatctggaacgcccagaagatcttcaggatcaacccccgcacccccacagacctc
aaccccctacgggtcgtacagggtgtccaggagctgagtaagaagttggtgattgtgaac
ggcgaggaccacctgagcagacaggcccagcagaacgccacgctgctcttcaacatccac
ctgcgctccacgttgagctcccgacgcatgacggacgagttcagactgagcaccgaggcc
tacgactggctgctgggagagattgagtccaagttcaaccaatccatcgcccatccgggc
gagatggtaggggcgttagctgcccagtcgctgggagagcccgccacccagatgaccctg
aacaccttccactacgccggcgtgtcggccaagaacgtcaccctgggcgtgccgcgtctc
aaggagttgatcaacatctccaagcggcccaagaccccgtccctcaccgtgttcctgctg
ggccaggcggcccgcgacgccgagagggccaaggatatcctctgtcgcctggaacacact
accctcagaaaggtgacggccaacacggccatctactacgaccctaacccccagagtacg
gtggtgacggaggaccaggagtgggtcaacgtctactatgagatgcccgacttcgacgtg
acccgcatctcaccctggctgctccgcattgagcttgaccgcaaacacatgactgaccgc
aagctgaccatggagcagatcgctgagaagatcaatgcaggtttcggagacgacctgaac
tgtatcttcaacgacgacaacgccgagaagctggtcctgcgaatccgcatcatgaacagc
gacgagaacaaattccacgaggatgaggaggtggtggacaagatggacgacgacgtgttc
ctgaggtgcatcgaatccaacatgctgacggacatgacgctgcagggcatcgagcagatc
agcaaggtgtacatgcacttgccccagacggacaacaagaagaagatcatcattacggag
gagggggagttcaaggccctgcaggagtggatcctggagacagacggcgtaggactgatg
agggtcctcagcgagaaggacgtggaccccgtcagaaccacctccaacgacatcgtggag
atcttcacggtgctgggtatcgaggcggttcgcaaggctctggagagggagttgaaccac
gtcatctcctttgacggttcctacgtcaactaccgccacttgtcgttgctttgcgacacc
atgacgtgccgcggtcacctgatggccatcacgcgtcacggcatcaacagacaggacacg
ggacccctcatgaagtgctcctttgaggagactgtggatgtgctgatggaggcgtcgtcc
cacggggagagtgaccccatgaagggtgtgtctgagaacatcatgctgggccagctggcc
ccctgcgggacgggctgcttcgacctgctgctggatgctgagaagtgcaaatacggcatg
gagatcccaaccaacatccctggcattagcgtggctggacccaccggaatgttctttggc
gctgcgcctagccccatgagtggcatgtctccagccatgaccccctggaacactggagcc
acccccgcctacggtgcctggtcccccagcatcggcagtgggatgacccctggagctgca
ggcttttctccgagcgcagcgtccgacgccagtggcttctctccgggctactccccggcc
tggtcccctacccctggatctcctgggtcccctggaccagccagcccctatatcccctct
ccaggaggtgccatgtctcccaactactcccccacctccccggcctacgagccccgctct
cctgggggatacaccccgcaaagcccgggctactccccaacgtccccctcctactcccca
acctccccctcttactcccccaccagccccaactacagccccacctcaccctcctattca
cccacctcccccagctactccccgacctccccctcatactcccctacgtcccccagttac
tcccctacctccccatcttactcccccacctcaccctcttactcccccacatctccctcc
tactccccgacctcccccagttacagccccacgtctccaagctacagccccacatcgcct
agctactcccccacctccccctcttactcccccacctccccctcctattcacccacttca
ccctcctactctcctacctccccctcctattcccctacctccccctcttactcccccacc
tctccaagctacagcccctcttcacccaactacaccccaacatcgcccagttactccccc
acctccccctcctactcccccacctccccctcctactcccccacctcccccaattacacc
cccaccagccccaactactcccccacctccccctcttattctcccacctctccatcctac
tctccctctagcccgcgcttcaccccccagtctcctaactacacccccagctctccctcc
tacagccccagctctccttcctactcgcccacctcccccaaatacacacctacgtccccc
tcttactcccccagctctccagagtacacccccacctcccccaaatactcccccacctcg
cccaagtactcccccacctctcccaaatactcccccacctccccgacttactccccgacg
acccccaagtacagccccacgtcgcccacctactcccccacctcgcccacctacaccccc
accagccccaagtactcccccacctccccaacctattccccaacctcacccaaatactct
cccacctcccccacctactcgcccactagccccaaagggtccacctacagccccctgtca
ccgggctacagcaacccctcgcccagcttcaccctcaccagcccggccatcagcccagat
gacagtgacgaggagaacaactga
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integrated database retrieval system
