Salmo trutta (river trout): 115198172
Help
Entry
115198172 CDS
T08542
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03020
RNA polymerase
stru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115198172
09124 Replication and repair
03420 Nucleotide excision repair
115198172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115198172
03400 DNA repair and recombination proteins [BR:
stru03400
]
115198172
Enzymes [BR:
stru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115198172
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
115198172
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
115198172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
115198172
NCBI-ProteinID:
XP_029615783
Ensembl:
ENSSTUG00000030813
LinkDB
All DBs
Position
8:11153919..11175596
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVDQQEQDSEDITKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPK
FSRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWST
FRMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
AIRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMG
HDVTRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAV
EFQNMATLKPSNKAFEKKFRFDCTNERALRRTLQEDVVKDVMTNAQVQSSLEREYEKMKE
DREILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLV
IVNGEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTV
FLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPD
FDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEEGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LNHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLME
ASSHGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGM
FFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPSSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS
PSYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPLSPGYSNPSPSFTLTSPAISPDDSDEENN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggtcacagaagggggaatcaag
taccccgagaccacagaaggaggacgtcctaaacttggtgggctgatggaccccagacaa
ggggtcatcgaacgatccggaaggtgtcaaacgtgtgcaggcaacatgacagaatgcccg
ggccacttcggccacatagagctggcaaagcctgtcttccacgtgggtttcgtcaacaag
atcatgaaggtcctccgatgtgtctgctactcgtgctccaagcttctggtcgacacgaat
aacccaaagatcaaagacatcctgcagaagtccaaggggcagcccaggaagcgtctgacc
cacgtgtacgacctgtgtaaaggcaagaacatctgcgagggcggagaggagatggacaac
aagtttggagtggaccagcaggagcaagacagtgaggacatcactaaggagaagggccac
ggtggctgtgggcgctaccagccgcgtatccgccggtcgggcctggagctgtacgctgag
tggaagcatgtgaacgaggactcacaggagaagaagatcctgctgagcccagagcgcgtc
tacgagatcttcaagcgtatctcggacgaggaggatgtcatcctgggcttggaccccaag
ttctcccggcccgagtggatgatcgtcacagtactccccgtgccgccactggctgtccgg
cccgccgtcgtcatgcagggctctgctcgtaaccaggacgacttgacacacaagctggcc
gacatcgtcaagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccac
gtcatcgcagaggacgtgaagctgctgcagttccacgtggccaccatggtggacaatgag
ctgccaggcctgcccagggcgatgcaaaaatcgggccgcccacttaaatccctcaaacag
cgtctgaaggggaaggaggggcgagtccgaggtaacctgatggggaaacgtgtggacttc
tccgcccgaaccgtcatcacccccgaccccaacctccagatcgaccaagtgggcgtcccg
cgctccatcgcagccaacatgaccttccctgaaatcgtcacaccctttaacattgacagg
ttacaggagctggtgcgcagaggcaacagccaatatcccggagccaaatatatcatccgc
gacaacggggacagaatcgacctgcggtttcaccccaaaccaagtgaccttcacctccag
attggctacaaggtggaaagacatatgtgcgatggtgacatcattatcttcaacagacag
cccacgctacataaaatgtctatgatggggcacagagtccgaatcttgccctggtccacc
tttcgaatgaacctcagtgtaaccaccccgtacaatgctgactttgacggggacgagatg
aacctgcatctcccccagtccctggagacgagagctgagatccaggagcttgccatggtg
cctcggatgatcgtcaccccccagtccaacaggcccgtcatgggcatcgtgcaggacacc
ctcacagcggtgcgcaagttcaccaagagggatgtcttcctagagcggggcgatgtgatg
aacctcctgatgttcctgtccacgtgggacggcaaggtgccccagccagccatcctgaag
ccccggccgctctggacgggcaagcagatcttcagcctcatcatcccgggccacatcaac
gccatccgaacacacagcacccacccagacgaggaggacagtgggccctacaaacacatc
tcccctggggacaccaaggtgatagtggagaatggagagctgatcatgggcatcctgtgt
aagaagtccctgggtacctctgctggctccctggtccacatctgcttcctggagatgggc
cacgacgtcacccgcctcttctactccaacatccagacggtggtcaataactggctgctc
attgagggtgcctcgattggtattggtgattctattgctgatgcaaagacttaccttgac
attcagaacaccatcaagaaggccaagcaggatgtaatagaggtcattgagaaggcccac
aacaacgagttggagcccacccctggtaacacgctgaggcagacctttgagaaccaggtg
aatcgcatcctgaacgacgcccgtgacaaaacaggttcctccgcccagaagtccctgtct
gagtacaacaacttcaagtccatggtggtggccggctccaaaggctccaagattaacatc
tctcaggttattgctgtggtggggcagcagaacgtggagggtaaacgtatcccctttggc
ttcaagcaccgcacgctcccccacttcatcaaggatgactacggccctgagagcagaggc
ttcgtggagaactcgtacctggctggcctcacgcccacggagttctttttccacgccatg
ggaggcagagaggggcttattgacacggctgtgaagaccgccgaaactggttacatccag
cgtcgtctgatcaagtccatggagtctgtgatggtgaagtacgacgccaccgtgaggaac
tccatcaaccaggtggtgcagctgcgctacggagaggacggcctggccggggaggctgtg
gagttccagaacatggccacgctcaaaccctccaacaaggccttcgagaagaagttcagg
tttgactgcaccaatgagcgggcgctgcggcgcaccctgcaggaggacgtggtgaaggac
gtgatgaccaacgcccaggtgcagagttccctggagagagagtatgaaaagatgaaggag
gacagagagattctgagggccatcttccccactggggacagcaaggtggtgcttccatgc
aacctggccaggatgatctggaacgcccagaagatcttcaggatcaacccccgcaccccc
acagacctcaaccccctacgagtggtagagggtgtccaggagctgagtaagaagctggtg
attgtgaacggcgaggaccacctgagcagacaggcccagcagaacgccaccctcctcttc
aacatccacctgcgctccacgctcagctctcgacgcatgacagacgaattccgactgagc
actgaggcttacgactggctactgggggagatcgagagcaagttcaaccagtctattgcc
cacccgggggagatggtgggggcgttagccgcccagtcgctgggagaacccgccacccag
atgaccctgaacaccttccactacgctggtgtgtcggccaagaacgtcactctgggcgtg
ccgcgtctcaaggagttgatcaacatctccaagaggcccaagaccccctccctcaccgtg
ttcctgctgggccaggcggcccgcgatgccgagcgggcgaaggatatcctctgtcggctg
gaacacaccaccctcagaaaggtgactgccaacacagccatctactacgaccctaatccc
cagagcacggtggtgacggaggaccaggagtgggtcaacgtctactatgagatgcctgac
tttgacgtgactcgcatctccccctggctcctccgcatcgagctcgaccgcaaacacatg
actgaccgcaagctgaccatggagcagatcgcagagaagatcaatgcaggtttcggagat
gatctgaactgtatcttcaatgacgacaacgccgagaagctggtcttgcgaattcgcatc
atgaacagcgacgagaacaagttccatgaggatgaggaagtggtggacaagatggacgac
gacgtgttcctgaggtgcatcgagtccaacatgctgacggacatgacactgcagggcatc
gagcagatcagcaaggtgtacatgcacttgccccagacagacaacaagaagaagatcatc
attacagaggagggagagttcaaggccctgcaggagtggatcctggagacagatggcgtg
ggactgatgagggtcctcagtgagaaggacgtggaccctgtcaggaccacctccaacgac
attgtagagatcttcacggtgctgggtatcgaggctgtacgtaaggcgctggagagggag
ttgaaccacgtcatctcctttgacggttcctacgtcaactaccgccacttgtcgttgctt
tgcgacaccatgacgtgccgcggtcacctgatggctatcacacgtcacggcatcaacaga
caggacacgggacctctcatgaagtgctcctttgaggagacggtggatgtgctgatggag
gcgtcatcccacggggagagtgaccctatgaagggtgtgtctgagaacattatgctgggc
cagctggccccctgcgggacgggctgctttgacctgctgctggacgctgagaagtgtaaa
tacggcatggagatccccaccaacatccccggtatcagcgtggctggacccaccggaatg
ttctttggctcggcgcccagccccatgagtggcatgtccccagccatgaccccctggaac
actggagccacccccgcctatggtgcctggtcccccagcattggtagcgggatgactccc
ggagcagcaggcttctctcccagcgcagcatccgacgccagtggcttctctccgggctac
tccccggcctggtcccctacccctggatctcctgggtccccggggccagccagcccctac
atcccctctccaggaggtgcgatgtctcccaactactcgcccacctcccccgcctacgag
ccccgctctcctgggggatacaccccccaaagcccaggctactccccaacctccccctcg
tactccccaacctccccctcttactcccccaccagccccaactacagccccacctccccc
tcgtactccccaacctccccctcgtactcaccaacctccccctcgtactccccaacctcc
cctagttactcccccacgtccccctcctactccccaacctccccctcgtactctccaacc
tccccaagttactcccccacgtccccctcttacagccctacgtccccaagctacagccct
acgtccccaagctactcccccacctcgcctagctactcccccacctcgcctagctactcc
cccacctcaccctcttactcccccacctccccctcctactcccccacctccccctcctac
tcccccacatctccctcttactcccccacctctccaagctacagcccctcttcacccaac
tacacccccacctccccctcctactcccccacctccccctcctactcccccacctcccca
aactacacccccaccagccccaactactcccccacctccccctcttattcccccacctcc
ccgtcctactctccctccagcccgcgcttcaccccccaatcgcccacctacacccccagt
tctccctcttacagccccagctcgccctcctactcacccacctcgcccaaatacacccct
acgtccccctcttactcccccagctctccagagtacacccccacctcccccaaatactcc
cccacctcgcccaagtactctccgacctctcccaaatactcacccacctccccaacttac
tcaccgacgacgcccaagtacagccccacttcgcccacctactcgcccacctcgcccacc
tacacccccaccagccccaagtactcccctacctccccaacatactctccaacctcaccc
aaatactctcccacctcccccacctactcaccaactagccccaaagggtccacctacagc
cccctgtctccgggctacagcaacccctcgcccagcttcaccctcaccagcccggccatc
agcccagacgacagtgacgaggaaaacaactga
DBGET
integrated database retrieval system
