Salmo trutta (river trout): 115205505
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Entry
115205505 CDS
T08542
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115205505 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115205505 (polr1a)
Enzymes [BR:
stru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115205505 (polr1a)
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
115205505 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
115205505
NCBI-ProteinID:
XP_029627423
Ensembl:
ENSSTUG00000029808
LinkDB
All DBs
Position
13:complement(25554750..25567635)
Genome browser
AA seq
1705 aa
AA seq
DB search
MLFGKEVPWRRLEGMTFGMYSAEEIRKLSVKNITNFRFLDNVGNVAPNGLYDLSLGPADS
KEVCSTCMQDFNNCPGHLGHIELPLPVYNPLFFDKLYLLIRGSCLNCHMLSCPRAAIHLL
LNQLKLLDVGALQEVYELEHVLNQFLEGNAQASGVEIQVVLEDYCAHVNKGKTGGDHSSP
IKHLCEKKNKLITLFWRVQMNSRKCPHCKSGRSQVRREHNSKLIVTLPAAMYKDGAIKGP
DEEDGMAGKRGYLTPSTARDHIAKLWDKEGFFLKCLFSGLEEGELSNNGIYPDLFFLELM
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDSGVIQKLLALLAGEKLKEKELELEEVQE
ADPSQTDQAFLAGIPGVTLTDKLYNTWIRLQSHVNIVFDSDMDKLMTEKYPGIRQILEKK
DGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGVPMVFATKLTYPQPVTPWNVKELRQAV
LNGPNVHPGASMVINEDGSRTILSSTNLTQREAIAKQLLTPCTGQHMMPMKIVNRHIKNG
DVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGR
AEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFSRDQYTELVYRGLTDKV
GRVKLLPPAILKPFPLWTGKQVVSTLLMNVIPGNHIPLNLTGKAKIPSKAWIKESPRCVP
GYKPETMCDSQVIFRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLF
TAYLQLYRGFTMGVEDILVKLGANRQRKQIIKESVTCGTKALQAAFNLPDTVDESEARGR
WQDAHLNPDQRDFNMVDLKFKEVANQVNNDINKVVMPLGLHCSFPENNLQLMVQSGAKGS
TVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYESSPRSGGFVSGRFLTGIKPPEFF
FHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD
VPKTQFLQPRQFPFIQDNYEVIRKLKCLDEVLAKLDPQAATNHFKAIRKWKAKREHLSPR
EGAFLLFSQKKLKKTECQALENLANGRDTATLKLVDRWSSLDQDSKSKYLKKTKHCPEPC
LSLFRPDISFGSVSETFDSIVESYLKDIQIKQLAEGSSKNLDAQRLKHLLQLKWQRALCD
PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSSIKTPMMSI
PVLNSKKAIKRVKTLRKKLTRVCLAEVLHKVDVLETLRVKNKRQKDRVFKITFRFLSPER
YQEDKMLTPHQILHYMENRFFRLLLEAIKKRNTKLASINAVETRKATVRDNDQDVGDSSA
GQESGEGDGDGEESRIVDDVGNEGDADASDAKRRENQEEEVDYESEEGEDAEEGEDLVDE
KDEQAEENSEEVPDEVTGDLATAGPVGAGARKKSKQKSTHTQDSMRVNTVLETSSSIEDY
SYDSQQGLWCEVTLVLPVSKVHFDLTSLVVAVAQNAVVMETKGITRCLLSEVTKKDGSKE
LELKTEGINMHELFNHSEILDVNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIE
VDPRHLSLVADYMCFEGVYKPLNRFAIQSNSSPLQQMTFETSYKFLKQATMLGSHDKLVS
PSACLVVGKVVKGGTGIFDLKQPLQ
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgggaaagaagtaccatggaggcggctggaaggaatgacatttggcatgtac
tctgccgaagaaataagaaagttgagtgtcaagaacattaccaacttcagattcctggat
aatgttggtaatgttgcccccaatggcctctatgacctgtcattgggcccagctgattcc
aaagaggtgtgctccacctgtatgcaagacttcaacaactgccctgggcaccttgggcac
atcgagctacccttacccgtatacaacccactcttctttgataaactgtacctgctgatc
cgagggtcatgtctgaactgccacatgctgtcctgccccagagcagcgatccatctcctg
ctgaaccagctgaagctgctggatgtgggagctctacaggaggtctatgagctggagcat
gtgctgaaccagttcctggaaggcaatgcccaagcttctggggttgagatccaggtggtg
ttagaggactactgtgctcatgtcaacaaagggaagacaggcggcgatcacagctcacca
atcaagcatctctgtgagaagaagaacaagcttataacactcttctggagggtccaaatg
aactccaggaaatgccctcactgcaagagtggcagatcacaagtgcgcagggagcacaac
agcaaactgattgtcaccttgcctgcggctatgtataaagatggtgccatcaagggaccc
gatgaagaagatgggatggctggaaaacgtggatacttgacccctagcacggcacgggat
cacatcgccaaactgtgggataaagaaggtttcttcctgaagtgcttgttctctggactg
gaggagggtgagctctccaacaatggcatttaccctgaccttttcttcctggagcttatg
gtggtccctccatgcaggtatcggcccattaaccgtctgggagaccagatgttcactaac
ggccagacggttaacatgcaggcagtgatgaaggacagtggcgttatccagaagctccta
gcacttctagctggagagaagctgaaagaaaaggagttggagctggaggaggtacaggaa
gccgacccctctcagacagaccaggccttcctggcagggatccccggtgtcacactcaca
gataaactctacaacacctggattcggctccagagtcacgtcaacatagtctttgacagt
gacatggacaaactgatgacggagaagtacccaggcattcgtcagatcttagagaagaag
gacggtttgttcaggaagcacatgatgggtaaacgtgtggactatgcagcacgctctgtt
atttgtcctgacatgtacattgggaccaatgagattggagtacccatggtgtttgccacc
aagctgacttacccccaacctgtgacgccttggaatgttaaggagctgaggcaggcagtt
ctgaacgggcccaatgttcaccctggggcctccatggtcattaacgaggacggctcccgc
accatcctcagcagtactaacctcacccagagagaggccatcgccaagcagctcctcaca
ccctgcaccgggcagcacatgatgcccatgaagatagtgaatcgtcacatcaagaatggc
gacgtcctgctcctcaaccggcagccaacactgcatcggccgtccatccaggctcactgc
gcccgcatcctgccaggggagaaagtgttaaggcttcactacgctaactgtaaggcctac
aacgctgactttgatggggatgagatgaatgcccatttccctcagagtgaactgggcagg
gctgaggcctacacactcgtcagcactgaccagcagtaccttgtgcccaaggatgggaag
cctctggcgggtctgatccaggatcacatggtgtcaggcactaggatgaccatccgcggc
tgcttcttctcccgtgaccagtacactgagctggtctaccgaggtctaaccgacaaggtc
ggcagagtcaagctgctgccgcccgccatactcaaaccattccctctctggactgggaaa
caggtggtgtctacactactgatgaacgtcatcccaggaaaccacatccctctgaacctg
acagggaaggccaagatccccagtaaggcctggatcaaggagtctccacgctgtgttcct
ggctacaagcctgaaaccatgtgtgactcccaggtgatcttccgtcagggagagttgctg
gtgggggtgttggacaaggcccactatggcagctcagcatatggcctggtccactgctgc
tatgagctgtatggaggagagaccagtggtaaactcctcagctgcctggctcgtctcttc
actgcctacctccagctgtaccggggcttcactatgggtgtggaggatatcttggtgaaa
ctaggagccaacagacagagaaagcagatcataaaagagtctgtcacttgtgggactaag
gccctgcaggcagcctttaacctgcctgacaccgtggacgagagtgaggctaggggccgc
tggcaggacgcccacctcaacccagaccagagagacttcaacatggtggacctcaagttt
aaggaggtggccaatcaggtcaacaacgacatcaacaaggtggtcatgcccctgggtctc
cactgcagcttccctgagaacaacctccagctgatggtgcagtctggggctaaaggctcc
actgtcaataccatgcagatctcatgtctgctgggtcagattgagctggagggccgacgt
cctcccctgatgccttctgggaaatctctgccctgcttccagccgtacgaaagttcgccc
cgctctggaggttttgtgtctggcaggttcctgacaggaatcaagcccccggagttcttc
ttccattgcatggctggccgggagggtctggtagatacagctgttaagaccagtcgatca
gggtaccttcagagatgtgtgatcaaacacctggagggcctggtggttcagtatgacctg
actgtgagggacagtgacggcagcgtggtccagtttctctatggagaggatggcctggac
gtccccaagacacagttcctccagccaaggcagtttcccttcatacaggacaactatgag
gtcatcagaaagttaaagtgcttggatgaggtcctggccaaactggaccctcaggctgcc
accaaccatttcaaagccatcaggaagtggaaagccaagagggagcatctttctcccagg
gagggggccttcctgctcttctcccagaagaaactgaagaagacagagtgccaggctcta
gagaacctggccaatggcagggatactgccactctgaagctggtggatagatggagttct
ctagaccaggacagcaaatctaagtacctgaagaagactaaacattgtcctgagccctgc
ctgagcctgttccggcctgacatctcatttgggtcagtgtcagagacatttgacagcatt
gtggagtcctatctaaaggacatccaaatcaagcagttagctgagggaagctcgaagaac
cttgatgcacaaagactgaagcatctgctgcagctgaagtggcagcgagccctctgtgac
ccaggggaggcggtgggtctgctggctgctcagagcatcggagagccttccacccagatg
accctcaacaccttccactttgccggcaggggggagatgaacgttaccctcggtatccca
aggcttagagaaatattgatgattgccagttccagcatcaagactccgatgatgagtatt
cctgtgttaaacagtaaaaaagccatcaagcgggtgaagacactaaggaagaagctgact
cgtgtgtgtctagctgaggtattgcacaaagtggacgtcctggagacactccgggtgaag
aacaaacgacagaaggaccgcgtcttcaagatcaccttccgctttctttccccagagcgc
taccaggaagacaagatgctgactccccatcagatcctccactacatggagaacagattc
ttccgcctactactggaggccattaagaagcgcaataccaagctggcctctatcaacgca
gtggaaacacgcaaggctacagtacgagataatgaccaggatgtaggggactcctcagct
ggacaggagagtggagaaggggatggggatggggaggagagcaggattgtggacgacgtg
gggaatgagggagacgctgacgcctcggatgcgaaaaggagagagaatcaggaggaggaa
gtggattatgagagtgaggagggagaggatgctgaggagggagaggacctggtggatgaa
aaagacgagcaggcagaggagaactctgaagaggtgcctgatgaggtgaccggtgacctg
gccactgcagggcctgttggtgctggggcaaggaagaagtcgaagcagaaaagcacacac
acacaggacagcatgagggtcaacactgtgctggaaactagttccagcatcgaggactat
tcctatgacagccagcagggtctctggtgtgaggttacgctcgtcctgcctgtcagcaag
gtgcactttgacctgacgtcgctggtggtggccgtggcccaaaatgcagtggtgatggag
actaagggcatcaccagatgtctgctcagtgaggtcactaagaaagatggctccaaggag
ctggagctcaaaactgagggcatcaacatgcacgagctgtttaaccacagtgaaattctt
gatgtgaatcggctttactccaatgaggtccacgccatggcaaacacgtacggcattgag
gtggccctgagagtcattgagaaggaaattaaagatgtcttcgctgtctacggtattgag
gtggaccccaggcatttatccttggtggccgactacatgtgttttgagggagtgtacaaa
cctctcaaccgctttgccatccagtccaactcctctccactgcaacagatgaccttcgag
accagctacaagttcctgaagcaggccactatgctgggctcccatgataagttggtctct
ccctcagcttgcttagtggtgggtaaggttgtaaaaggagggaccgggatctttgatctc
aagcagccattgcaataa
DBGET
integrated database retrieval system
