Sceloporus undulatus (fence lizard): 121916789
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Entry
121916789 CDS
T07740
Symbol
BRIP1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03440
Homologous recombination
sund03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121916789 (BRIP1)
03460 Fanconi anemia pathway
121916789 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sund03400
]
121916789 (BRIP1)
Enzymes [BR:
sund01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121916789 (BRIP1)
DNA repair and recombination proteins [BR:
sund03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
121916789 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
121916789 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
121916789
NCBI-ProteinID:
XP_042298181
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All DBs
Position
11:8271677..8466666
Genome browser
AA seq
1278 aa
AA seq
DB search
MASSASEYTIGGVKILFPCKAYPSQLAMMNAIVKGLNSKQHCLLESPTGSGKSLALLCSA
LSWQQAQYEKPNDDLTGSKGCKKPDLLMSCRCGCHASHATQSQDGAKQSQGTSYAFTNSG
PVTPTNSGGKPKDKDSNLYPAVGKDASKTTLASKLSAKKQASLQEGGEDDDFRVDRKRNR
SLETEEQARKRHRLAKGVQFVGALEMYQQQKNGKLIEASGKAAPSALKTPSSPCGRCSCS
SVEGKARDAADAKKKENGERPSIPKIYFGTRTHKQIAQITREMRRTAYSGVQMTILSSRD
HTCVHPTVSTCSNKNEKCVELLEAKDGTSCSYYHGVHKLSEYHLCQFAQKKYQAWDIEDL
VRLGKKLRACAYFGARELMGPADIVFCPYNYLLDPQIRESMEIDLKNQVVILDEAHNIED
CARESASYSVTEAQLQLAREELDTMVNNNIRKQDHEPLRAVCCSLTNWLKETCGQLVERD
YEASSKVWSGRQMVTFLHEMGITNASFPFLQRHLSAVLEKEEKVPLFHGGETSVTIPVIS
PPTQIVLKGLFMVLQYLFRENHRFADDYRVALQQIYTWTNVNPADAPDENGFFARPKRRS
RHKVAVHTLNFWCLNPAVAFSDLSSNVRSIVLTSGTLSPMDSFSSELGVKFSIQLEASHV
IQNSQVWVGTIGAGPKGKSLCATFQHTETFDFQDEVGALLLSVCRTISQGVLCFLPSYKM
LDKLKDRWMHTGLWEKLELIKTVIVEPKGGDKADFDDLLQTYYDAIKCKEGKDGALLIAV
CRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRKYNDQHSKARGLLPGSQWYEIQ
AYRALNQALGRCIRHRSDWGALILVDDRFGRNPNKYIAGLSKWIRQQIQHHENFDHALGS
LDTFAKTNQKNADSSPEGNKSYSLMPPSPKDLSATSFLEATLHLSPGVTVERRRHNKSPE
TLSATDIVAINPTTSSPSCDAPLKKKRPHSSHQTAKQENLTDTKPKNPTSENKREKANSR
LASVGLKRYFSVSSTSTPLPALNTNCTPKTKWQPKRLMGETNLPVANGPQQDVVLVEEDR
PTGLKPHKETISYLSGKAISSVIRECPTKEQLRTPEDKANVAISPVKGNVELSTSDGATE
TDAGDDSIYFTPELYDNVKPAEGENERLTNTCGDAGTVFETAISIVAEEVCETSALNPVD
AAPSIKMGAEWQRAVLSSESNEDAVRPSGQSPRIGEVEREGKKRKNRLSRSQNKVIGLAP
PVDFCTSVKYRTLNVCWN
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtccgcttcagaatacaccattggcggcgtgaagatcctcttcccttgcaag
gcatatccttcgcagttggcaatgatgaacgccatcgtgaaagggctaaactccaagcaa
cactgcctcttggagagtccaaccggaagtgggaaaagcttggcattgctctgttccgct
ttgtcgtggcagcaggcacagtatgaaaagcccaatgacgacttgacgggctcaaaggga
tgcaagaagccggatctcttgatgtcgtgccgttgcggttgccatgctagccacgcaacg
cagagccaggatggtgcaaagcagagccaaggcacgtcttacgccttcaccaacagtgga
ccagtcacacccaccaacagtggaggaaagccaaaagacaaagactccaatttatatcct
gccgttggaaaggacgcgtcaaaaaccacacttgcttccaaactgtctgcaaagaagcag
gcgtctttgcaggaaggtggtgaagatgatgattttagagtggataggaaacggaatcgt
tctctagaaaccgaagagcaggctaggaaacgacaccggctggccaaaggagtccagttt
gttggcgctttggaaatgtatcagcagcagaaaaacgggaagttgatagaggcctcggga
aaagctgcgccttccgctctcaaaactccttctagcccttgcggtcggtgttcctgctct
tctgtggagggaaaagcccgagacgctgccgacgccaagaagaaagaaaatggagagcga
ccctccatccccaaaatatactttggaacccgaacccacaaacagatagctcagattacg
cgggagatgcggaggacggcgtattcaggtgtccagatgacaatcctttcgagccgggac
cacacttgtgtccatccgacggtatcgacatgcagcaacaagaacgaaaaatgcgtagag
ctgctggaagccaaagatggtacatcttgttcttactaccatggagtccataagttgagc
gaataccacctctgccagtttgcccaaaagaaataccaggcgtgggacatagaagacctg
gtacgcctgggaaagaagttacgagcctgtgcttatttcggtgctcgggagcttatgggg
ccagcggacattgtcttttgtccttacaattaccttttagacccacagataagagagagt
atggaaatcgatttgaagaaccaggtggtcatcttagatgaagctcataacatcgaggac
tgtgcccgggaatcggccagctacagtgtgacagaagctcagctgcagttggctagagaa
gagctggacacaatggtcaacaacaacatcagaaagcaagaccatgagcccttgcgcgcc
gtatgctgcagcttgacaaactggttaaaggaaacttgtggtcagctggtagagagagat
tatgaggcctctagtaaagtctggagtggaaggcaaatggtgacattcctccatgagatg
ggaataaccaacgcttcgtttcccttcttgcagcgacatttaagtgctgtgcttgaaaaa
gaagaaaaagttccacttttccatggcggagaaacatcagttaccattccagtcataagc
cctccaactcagattgtcctaaaaggcctgttcatggtgctgcagtatcttttcagagag
aaccacaggtttgctgatgattacagagttgccttgcagcaaatctacacgtggacaaat
gtgaatccagcagacgctccggacgagaacggtttttttgcacgaccaaagagaagatca
cgacacaaagtggcagtgcatacgctcaacttctggtgcttgaacccagctgtggcgttc
tctgacttgagcagcaatgtcagatccatcgtcttaacctctgggaccctttctccaatg
gactccttttcttctgagcttggtgtgaagttttccattcagcttgaagcaagccatgtt
attcaaaactcacaggtgtgggtcggtactatcggagctggtcccaaaggcaagtcctta
tgcgccactttccagcacaccgaaacctttgacttccaggatgaagtgggggcgcttttg
ctttcggtttgccggaccatcagccaaggagttttatgctttttgccgtcatataagatg
ttggataaactgaaagatcgctggatgcacactgggttatgggaaaagcttgaactgata
aagactgtgattgtggagcccaaaggaggagacaaggcagacttcgacgatctgctccaa
acctactatgatgccatcaaatgtaaagaagggaaagatggcgcactccttatcgctgtc
tgcagaggcaaagtcagtgaaggcttggacttctcggatgacaacgcccgcgcggttata
accataggaatcccattcccaaacgtgaaggatcttcaggttgagctgaagaggaaatac
aatgaccagcactcaaaagcaagaggacttttgccagggagccagtggtacgaaatccag
gcttacagggctctcaaccaagccctgggcaggtgcattcgccatcggagtgactgggga
gctctcattttagttgatgaccgcttcggaaggaacccaaataaatatatagctggttta
tcgaaatggattcgccagcaaatccagcaccacgaaaactttgatcatgccctcggttct
ttggatacatttgccaaaacaaaccagaagaacgcggattcttctcccgagggcaacaag
agttattcgctcatgcctcccagtccaaaggatctgtcagcaacgtcttttctggaggca
actcttcatctctcgccaggtgttactgttgaaagaagaaggcacaataagagcccggaa
acgctttccgcaactgacatcgtcgcaattaatccaacaacatctagtccatcatgtgat
gcacctctcaagaaaaaacgtcctcactcatctcaccagacagcaaagcaagaaaatctt
acagacaccaaacccaaaaatcccaccagtgaaaacaagagggaaaaagcaaatagtcgg
ctcgcctctgtcggtctaaaacggtatttcagcgtatcatcgacatccacgcctctacct
gcactgaatacgaattgcacacccaaaacaaaatggcagccaaagaggctgatgggtgaa
acgaacctgcctgtggcaaatggtcctcagcaagatgtagtattggttgaggaggacagg
ccaactggattgaagccacataaggaaaccattagctatctttctgggaaagccatcagc
tctgtcattcgggaatgtcctaccaaagagcagcttcgcactcctgaagacaaggcgaat
gtggccatttctccagtgaaaggaaatgtggaactttcaacatcggacggagctacagaa
acagatgctggcgatgacagtatctatttcacacccgaactttacgacaacgttaaacca
gcggaaggggaaaacgaacggctaactaacacttgtggcgacgctgggaccgtctttgag
actgcaatctcgattgtggctgaagaagtttgtgaaactagtgcactaaacccagtagac
gcagcgcccagcattaaaatgggtgcagagtggcaaagagccgtgttaagtagtgagagt
aacgaagatgccgtcagaccgtctggacagagtcctaggataggtgaagttgagcgggaa
ggaaagaaaaggaaaaacagactttcccgatctcagaacaaagtcataggtttggctccc
ccagtcgatttctgtacatctgtcaagtaccgaacgttgaacgtttgctggaattga
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integrated database retrieval system
