Sceloporus undulatus (fence lizard): 121934645
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Entry
121934645 CDS
T07740
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121934645 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sund03021
]
121934645 (POLR1A)
Enzymes [BR:
sund01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121934645 (POLR1A)
Transcription machinery [BR:
sund03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
121934645 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
121934645
NCBI-ProteinID:
XP_042331247
LinkDB
All DBs
Position
6:80442090..80482225
Genome browser
AA seq
1641 aa
AA seq
DB search
MQDFNNCPGHLGHIELPLTVYNPLFFDKLFLLMRGSCLNCCHLTCSRAVIHLLLNQLKLL
EAGLLQAAHDLEAILSRFLDVDPNGDVEEVLRLHVEEMLQNDQLRDQGAPVKTVCEYRNK
LISQFWKLHMKPKRCPNCKAGRSFIRKEHNSKLIVTNPTVVSEKSGKPTIVEEAAILDET
QLGKRGYLTPMIAKQHIEALWKNDGFFLSKLFSGMTVAGDSNFNSDMFFLDQLVVPPSRH
RPVSCVGDQMFANGQTVNLQAVMRDAQLTRKLLAVIAQEESQSLQTQMGDFKMVTEQTLE
PLDRSFLVTIPGQTIADKLYNIWIRLQSRVNILFDSDMDKMLTEKYPGVRQILEKKDGLF
RKHMMGKRVDYAARSVICPDMYIQTNEIGIPMVFATKLTYPQPVTPWNVQELRRAVINGP
NQHPGASMIINEDGSRTILSTTNETQREAIAKQLLTPSAGTPKPGIKTVCRHIKNGDVLL
LNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQNELGRAEAY
ILACTDKQYLVPKDGTPLAGLIQDHMISGTSMTTRGCFFTREQYAQLVYQGLTDKKGKVK
LLPPSILKPQCLWTGKQVVSTLLINVIPEDHIPLNLSGKAKIGGKAWVKKSSHRIYRTNL
DYMCESEVIIRNGELLCGVLDKAHYGSSAYGLVHCCYEVYGGETGGKVLTALARLFTAYL
QFYRGFTMGVEDILVKHHADHKRCKLIKESTHYGTKAIQAAFNLPHTASSEELRSKWQDA
HLHKDQRDFNMVDMKFKEVVNHCSNEINKVCMPLGLQRSFPENNLQLMVQSGAKGSTVNT
MQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDFSPKSGGFVTSRFLTGIKPSEFFFHCM
AGREGLVDTAVKTSRSGYLQRCIIKHLEGLIVNYDLTVRDSDGSIIQFLYGEDGLDIPKT
QFLQSKQFPFIADNHKAIEKSEHLDEILPKMDPEQANVQFRAIKKWQAKNQLPLRRKGGF
LQFCQKKLAGIRAQIPTGELVNGRDPTTLQLLKMWYEQNEKSRRKYQKKAAKCPDPSLSI
WRPDIHFGSVSETFENGVENFIGEWDTQNELSYNKSDLSSQRLKDLLHLKWQRSLCDPGE
AVGLLAGQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASANIKTPMMSVPVL
NTKKAHKGAKRLKKQLTRLYLGEVLEKVDIKESLHMNEMQSKHRVYTIRFYFLPYECYKE
EKYVKPRDILHFMESKFFKILLETIKKKCSKLPLYNTVSTRRAVQRDVEDGEENDASQEN
QDNNEAEAEEEGRVPDVPDDERDEEYVDASDAKRKANQEEEVDYESDEDNEIEDDDILEE
EENEVNGRNPETNESQDETYAPSSSQRAHNKQMDVNNLPQQRINAVLEKHDAAESYAYDI
DNELWCEISLKLPLINEYFDFPSLLTSLANGVVIHETKGITRCLLNESSNKNGEVELTLQ
TEGINLPELFRYADILNVNRLYCNDIHAMASTYGIEAALRALEKEIKDVFGAYGIVVDPR
HLSLVADYMCFEGIYKPLNRYGIQSSSSPLQQMTFETSYKFLKEATMLGSHDKLQSPSAC
LVVGRVVKGGTGLFDLKQPLK
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacttcaacaactgcccaggtcacttgggtcacatagagctccccctaactgtc
tataatcctctcttttttgataaattattccttctgatgcgaggttcgtgtctgaactgt
tgccatctgacatgttcacgtgctgtgattcatttattgcttaaccagctgaagcttctg
gaagcagggctgctacaagcagcccatgatctggaagccatcctcagtaggtttttagac
gttgatccaaatggtgatgttgaggaagtattacgcttgcacgtagaggaaatgcttcag
aacgaccaactaagagaccaaggtgcacctgtaaaaacagtatgtgaatataggaataaa
cttatctcccagttttggaaattacatatgaaaccaaagagatgtccaaactgcaaagct
ggaagatcatttatccgaaaagaacacaatagcaaactcatagtgacaaaccccacagtc
gtaagtgagaaatctggcaaaccgacaatagtggaggaggcagcaattctagatgaaacc
cagctgggaaaacggggctatttgacgcctatgattgccaaacaacacattgaagctttg
tggaagaatgatggatttttcctttcaaagcttttctctggtatgacagtcgcgggtgat
tcaaatttcaattctgatatgttcttcctcgaccaacttgttgttccaccctcgaggcat
cgccctgtgagttgtgtgggagaccaaatgtttgcaaatggtcaaacagtgaacttacaa
gcggtcatgagggatgctcaactgactcggaaactattggctgttattgctcaagaagaa
tcccagtccttgcaaactcagatgggagacttcaagatggtgacagaacagaccttggaa
cccctggaccgcagcttcctagtgacaatcccaggtcagactattgcagataagctgtac
aacatctggattcgtctgcagagccgtgtaaatattttgtttgacagtgacatggataag
atgctaactgaaaaataccctggtgtacgtcagattctggagaaaaaggatggcttgttc
cgtaagcacatgatgggaaagcgagtggattatgctgctcggtccgtcatttgtcctgat
atgtacattcaaaccaatgaaattggcatccctatggtgtttgctaccaaactgacttat
cctcagcctgtaactccctggaatgtccaagagttgagacgggctgttataaatggtccc
aatcagcatcctggtgcttccatgatcatcaatgaagatgggtctcgcacaatactgagc
acaaccaatgagacccagagagaagccatagccaagcaactcctgactccttccgctggg
acaccaaaaccaggaataaaaactgtgtgccggcatattaaaaatggagatgtactttta
ctgaatcggcaacctacccttcacagaccctccatccaagctcatcgagcaaggatcctc
cccggcgagaaggttctgaggctccactatgccaattgcaaagcctacaatgccgatttt
gatggtgatgaaatgaatgctcactttccccagaatgagttgggccgagctgaagcatat
atattggcttgtactgacaaacagtatctagttcctaaggatggaaccccattggcaggt
ttgatccaagatcatatgatctctggtaccagcatgactacacgaggctgcttcttcact
cgtgagcaatatgcacaactagtgtatcaagggctgacagacaaaaaggggaaggtgaaa
ctcctacctccttccattttaaaaccacagtgtttgtggacaggaaagcaggttgtttct
acattgctaataaatgtaattccagaggatcacattcctctgaatttgtctggaaaagct
aagattggtggaaaagcatgggtgaagaagtcttcccatagaatttacagaacaaatctt
gactatatgtgtgaatctgaggttatcatcagaaatggggaattgctttgtggggtcttg
gataaagctcactatgggagctctgcctatggtttagtccactgctgctatgaggtttat
ggtggtgagactggtggaaaggtgctgacagctctggctcggctcttcactgcctacttg
cagttctacaggggttttacaatgggagttgaagacattttggtcaaacaccatgcagat
cacaagagatgcaagctcattaaagaaagtacccactatggtacaaaggctattcaagct
gcatttaatttgccccatactgcatcatctgaggagctccgaagcaaatggcaagatgca
catcttcacaaagaccaaagagattttaacatggttgatatgaaattcaaagaagttgtc
aaccattgcagcaatgaaattaacaaggtgtgcatgcctcttgggcttcagcggagtttt
cctgagaataatttgcagctgatggtacagtcaggagccaaaggctctactgtgaatact
atgcagatatcttgcttgctgggccagattgagttagaaggtcgaaggcctcccttgatg
ccatctggtaaatcattgccatgtttccagccttatgacttttcccccaaatcaggggga
tttgtgacaagtcgattcctcactggtatcaaaccttcggagttcttcttccattgtatg
gctggtagagagggtctagtggatactgctgttaaaaccagccgatccggataccttcaa
aggtgtatcataaaacatttggaaggcctgatagtaaattatgacctgactgtgcgagac
agtgatgggagtataattcagtttctctatggagaagatgggttagatatccccaaaaca
cagttcttgcagtccaagcagtttcctttcattgcagataaccacaaggcgatagagaaa
tctgagcatcttgatgaaattctgccaaaaatggaccctgagcaagcaaatgtacagttc
agagccatcaagaaatggcaagccaaaaaccagctgccattgagaagaaaaggaggcttt
ttgcaattctgtcagaaaaagttggctggtataagagcacagatccctacaggagaactt
gtaaatggtcgagatcccacaactctacagttgctgaaaatgtggtatgaacagaatgag
aagagtcggaggaagtatcagaagaaggcagcaaaatgtccagatcctagcctttccatc
tggcgaccagacattcattttggatcagtatcagaaacatttgaaaatggagtagagaat
ttcattggagagtgggacactcagaatgaacttagctacaacaaatctgatctttcttct
cagagattaaaggatttactgcatttaaaatggcaacggtcactctgtgacccaggagaa
gctgtgggtctccttgcaggtcaaagtattggagaaccctccacacagatgactctgaac
acatttcactttgctggaagaggagaaatgaatgtcacccttggtattccaaggttgagg
gagatcttgatgatagccagtgctaatatcaaaacgccaatgatgagtgttcctgtactt
aacaccaagaaagctcacaagggggcaaagcggctcaagaaacagcttacaagattgtac
ttaggggaggtgttagaaaaagttgacatcaaagagtctctgcacatgaacgagatgcaa
agcaagcaccgtgtttataccatcagattttattttctgccatatgaatgctataaagaa
gagaaatatgtgaagccaagggacatcttgcattttatggagtcaaaattttttaaaatc
ttgctggaaaccattaaaaagaagtgttcaaagttgccactttacaacactgtcagcact
cgaagagcagttcagagggatgtagaagatggtgaggaaaatgatgcctcccaggaaaat
caggacaacaatgaagctgaagctgaggaagaaggaagagttccagatgttccagatgat
gaaagagatgaagagtacgtagatgcttcagatgcaaaaagaaaagctaaccaggaagag
gaggttgattatgagagtgatgaagataatgaaatagaggacgatgacattctggaagaa
gaagagaatgaagtgaatggaaggaatccagagacaaatgaaagtcaagatgagacgtat
gctccttcctctagccaaagggctcacaataaacaaatggatgtaaataacttgccacaa
caaagaattaatgctgttttggagaaacatgatgctgcagagagctatgcatatgacatt
gataatgaactgtggtgtgagatttcactgaagcttcctctgataaatgagtattttgac
tttccctcacttctgacatctctagcaaatggcgttgttattcatgagacaaaggggatt
actcggtgcctcttaaatgaatccagcaataaaaatggagaggtggagctcactttacag
actgaaggaataaatctccctgagcttttccgctatgctgatattttaaatgtgaacagg
ctttattgcaatgacatccatgcaatggccagtacctatggcattgaagctgccttgaga
gcccttgagaaggagattaaagatgtttttggtgcatatggaattgtggtagatcctcgg
cacctctctctggtggctgactacatgtgctttgaaggtatttacaaaccactgaatcgg
tatgggatacagtccagttcatccccattgcagcaaatgacatttgagacaagctacaag
tttctaaaggaagcaaccatgttgggctcacatgacaaactgcaatctccatctgcttgc
ttggttgtaggaagagttgtcaagggaggaaccggcttgtttgatcttaaacaacccctt
aaataa
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integrated database retrieval system
