Serratia ureilytica: J0X03_00675
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Entry
J0X03_00675 CDS
T07185
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
suri
Serratia ureilytica
Pathway
suri02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
suri00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
J0X03_00675 (pdeR)
Enzymes [BR:
suri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
J0X03_00675 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_4
PAS
PAS_10
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
QSR07541
LinkDB
All DBs
Position
complement(140906..142900)
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AA seq
664 aa
AA seq
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MSADQGPELLNAHFGTQSPHWRLAFDSNALELSAVKGKAHVAVALSAMDAAKIRRLTGVT
ASLELTITLAGEPLHLHLVGRRVNNLEWAGTASAFSDTQSVARDLVHGLSFAEQVVSEAN
SVIVIVDQHGRIQRFNRLSEEYTGLHEHEVIGKNVFQLFMSPEEAAASRRNIAGFFRNGS
SYEVERWVKTVKGERLFLFRNKFVHSGSGKNEVFLICSGTDITEERRAQERLRVLANTDI
ITGLPNRNAIQDKINHAIATRGEESFGLVYLDLDNFKKVNDAYGHMFGDRLLVEVSLAIL
GCLSPDQVLARLGGDEFLVLAPQTDRERLQTLAQRIIDRLKTPFRIGLIEVYTGCSIGIA
LCPEHGNDLDSLIRSADTAMYVAKEHGKRTYTVFSPEMNKRVAEYMWLDTNLRKGLEQNQ
LVLYYQPKIDARSGEVHSVEALVRWDSPERGLIPPLQFISYAEESGLIGPLGQWVLQTAA
CQAAQWRERGLNLRVAVNLSARQLADDGIVNDLLGVLRRHRMAPCLLDFELTESSLIEDE
NRARVLITRLRELGAQVHLDDFGTGYSSLAQLARIPLDAIKLDKSFVRGVNFNPVSQSLV
RAIVAAAEALAFRVIAEGVETESENQFLDEVGVDEKQGFLFARPMLPEQLEHWLQSYRPR
SPSA
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaccaaggccctgagcttcttaacgcccacttcggcacccagagcccccac
tggcggctggcgtttgacagcaatgccctggagctgtccgccgttaagggcaaagcccac
gtcgcggtggcgctgagcgccatggacgcggcgaaaattcgccgtttgaccggcgtgacc
gccagccttgaactcaccattacgctggccggcgaaccgctgcatctgcatctggtcggg
cgccgcgtcaataacctcgaatgggcgggcaccgcgtccgcgttcagcgatacccaatcc
gtggcgcgcgatctggtgcatgggctctccttcgccgagcaggtggtgtccgaagccaac
tcggtgatcgtgatcgtcgaccagcacggccgcatccagcgcttcaatcggctgagcgag
gagtacaccgggctgcacgaacacgaggtgatcggcaagaacgttttccagctgtttatg
agcccggaagaagccgccgcctcgcggcgcaacatcgccggcttcttccgcaacggttct
tcgtatgaggtggaacgctgggtaaagacggtcaagggcgagcgactgttcctgtttcgc
aataagttcgtgcacagcggcagcggtaagaacgaggtgtttctgatctgctcaggaacc
gacatcaccgaagagcgtcgcgcgcaggaacggctgcgggtgctggccaacaccgatatc
atcaccggcctgccgaaccgtaacgccatccaggacaagatcaaccacgccatcgccacg
cgcggcgaagagagtttcggcctggtgtacctcgatctcgacaacttcaaaaaggtcaac
gacgcctacggccatatgttcggcgatcggctgctggttgaggtctcgctggcgatcctc
ggctgcctgagcccggatcaggtgctcgcccgcctcggcggcgacgaatttttggtgctg
gcgcctcagaccgatcgcgaacgtttgcaaacgctggcgcagcgcatcatcgatcggctg
aagacccctttccgcatcggcctgatcgaagtgtataccggctgttcgatcggcatcgcg
ctgtgcccggagcacggcaacgatctcgacagcctgatccgcagcgccgataccgccatg
tacgtcgccaaggagcacggcaagcgcacctataccgtcttctcgccggagatgaacaag
cgcgtcgccgaatacatgtggctggacaccaacctgcgtaaagggctggagcaaaatcag
ctggtattgtattaccagcctaaaatcgacgcgcgcagcggtgaagtgcacagcgtggaa
gcgctggtgcgctgggattcgccggagcgcggcctgatcccgccgctgcagttcatctcc
tatgccgaggagtccggcctgatcggcccgctgggccaatgggtgttgcagaccgccgcc
tgccaggcggcgcagtggcgagagcggggattgaatctgcgggtggcggtcaacctctcc
gcccggcagctggcagacgacggcatcgtcaacgatctgctcggggtgctgcgccgtcac
cgcatggccccttgtctgctggacttcgagttgactgaaagcagcctgattgaagacgaa
aaccgcgcgcgcgtgctgatcacccggctacgcgagctgggcgcgcaggtgcatctcgac
gacttcggcaccggctattcgtcgctggcgcagctggcgcgtattccgctggacgccatc
aagctggataaaagcttcgtgcgcggggtgaatttcaacccggtttcgcaatcgctggtg
cgcgcgatcgtcgcggcggcggaggcgctggccttccgcgtgatcgccgaaggggtggag
accgagagcgaaaatcagttcctcgacgaggtcggcgtggacgaaaagcagggctttctg
tttgcacggccaatgctcccggaacagctggagcattggctgcagtcctatcgcccgcgc
tcaccttccgcgtga
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