Shewanella violacea: SVI_3132
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Entry
SVI_3132 CDS
T01206
Symbol
fadB-3
Name
(GenBank) fatty oxidation complex, alpha subunit
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
svo
Shewanella violacea
Pathway
svo00071
Fatty acid degradation
svo00280
Valine, leucine and isoleucine degradation
svo00310
Lysine degradation
svo00362
Benzoate degradation
svo00380
Tryptophan metabolism
svo00410
beta-Alanine metabolism
svo00640
Propanoate metabolism
svo00650
Butanoate metabolism
svo00907
Pinene, camphor and geraniol degradation
svo00930
Caprolactam degradation
svo01100
Metabolic pathways
svo01110
Biosynthesis of secondary metabolites
svo01120
Microbial metabolism in diverse environments
svo01200
Carbon metabolism
svo01212
Fatty acid metabolism
Module
svo_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
SVI_3132 (fadB-3)
00650 Butanoate metabolism
SVI_3132 (fadB-3)
09103 Lipid metabolism
00071 Fatty acid degradation
SVI_3132 (fadB-3)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
SVI_3132 (fadB-3)
00310 Lysine degradation
SVI_3132 (fadB-3)
00380 Tryptophan metabolism
SVI_3132 (fadB-3)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
SVI_3132 (fadB-3)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
SVI_3132 (fadB-3)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
SVI_3132 (fadB-3)
00930 Caprolactam degradation
SVI_3132 (fadB-3)
Enzymes [BR:
svo01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
SVI_3132 (fadB-3)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
SVI_3132 (fadB-3)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
SVI_3132 (fadB-3)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
SVI_3132 (fadB-3)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
3HCDH
ECH_2
ECH_1
NAD_binding_2
CID_GANP
DAO
UDPG_MGDP_dh_N
Motif
Other DBs
NCBI-ProteinID:
BAJ03103
UniProt:
D4ZAQ8
LinkDB
All DBs
Position
complement(3542442..3544601)
Genome browser
AA seq
719 aa
AA seq
DB search
MFQGQYFQLVPRDQFAELIFDSQTDGVNTLNRAALEELEQAIAIIAATDISGLIIRSGKA
LFSAGADVKAFRDLFNESDETVDEYLSWVHGIYNSLEALPIPKVALLNGVAAGGGVELSL
LAEYRLGTKDIKLSLPEVKLGIMPGWGGMTRLPRVLGLDTSLEWLTTGKTFRADKALTHH
FIDGIIDSEKFDPLEQAEALLKSCIDGDLDWKVRQTEKQSPLTLSQYELEMSLSVAGGMV
AKVAGKHYPAPRIMLEVIKEAAGCELDAALAIERRGIIKCIRSGVADALVSFFLSDMAVK
AKSKKLAKQAKAYSDSDINEVGVIGAGIMGGGIAYVTADRGMSVVLKDINKAGLALGLSE
ANKLLAKQVEKRRKTPIEMGNTLNRIVPTLHNAPLASTDLVIEAVVENPVVKAKVLAELE
ELAPNAIIASNTSTLEISGLAKSLKRPENFCGIHFFNPVHKMPLVEVIKGEKTSDETLAK
AVSYVNKLGKTPIVVNDCAGFLVNRCLTPYFHAFNQLMTDGGQLAVIDKVMSKGFGWPMG
PALLLDVIGLDTAAHCIDVMAEAFPERMYKPEINLIQTLADRKDFGQKTGQGFYRHSADR
RGRIKPSNCPESNELIESMVKPTQEFDAETITMRMMLPMMFEAIRCLDEGVVASAQEADI
ALVYGTGFPPFRGGIFYYMDQIGAQGLLDLAERYQDLGALYHAPESLIERAKSNRKFYA
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaggtcaatattttcaactggtccctcgagaccaattcgccgagctgattttt
gattctcagaccgacggtgttaacaccttaaaccgtgcggcgctagaagagctagagcaa
gcgatagctatcattgccgcaacagacatcagcggcctgatcatacgttcaggtaaggcg
ctgtttagtgctggcgccgatgtaaaagcattcagagacttgtttaatgagtctgatgag
actgtcgatgaataccttagttgggttcacggcatctacaacagtcttgaggcgttgcca
atccctaaagttgcactgcttaacggcgttgcagctggcggtggagtcgagctatctctg
ttggctgagtatcgcttaggcaccaaagatatcaagctaagcttgcctgaagttaaactt
ggcatcatgcctggttggggcggtatgacccgtctacctagagttctaggtctggatact
tctcttgagtggttgaccactggcaagacattcagagctgataaagccttaactcatcat
ttcatcgatgggattatcgacagcgaaaaatttgatccactagagcaagctgaagcgtta
ttgaagtcttgtatcgacggcgatctagattggaaagtgagacagacagagaagcagtcg
ccattgaccttgagtcagtacgagcttgagatgtctcttagtgttgctggtggcatggtt
gctaaagttgccggtaaacattacccagctcctagaatcatgctagaagtgattaaagaa
gctgctggctgtgaacttgatgccgcattggcaatcgagcgtcgcggtatcatcaagtgt
atcagaagcggtgtggctgatgctctagtgtctttcttccttagcgatatggccgttaaa
gccaagagcaagaagttagccaagcaggctaaggcctacagtgattcagacattaatgaa
gttggcgttattggcgctggcatcatgggcggcggcattgcttatgtcacggctgacaga
ggcatgtcggttgttctgaaagatattaataaagctggattggctttaggcttgagtgaa
gctaacaagttgctggctaagcaagttgagaagcgtagaaagacgccgattgagatgggt
aataccttgaatcgcatcgtacctactctacataatgctcccttggctagcacagattta
gtcatcgaggcagtcgttgagaacccagtcgttaaggctaaggtacttgctgaactcgaa
gagcttgctcctaatgcaatcatagcgtcgaatacttcgactcttgagatttctggactt
gctaagtcgctaaaacgccctgaaaacttctgtggtattcacttcttcaatccagtgcac
aagatgccattggttgaagtcatcaagggtgagaaaaccagcgatgagaccttggctaag
gcagtgagctatgtgaacaagcttggtaagacacctatcgtagtcaacgattgcgcaggt
ttcttggttaaccgatgcctgactccttatttccatgccttcaatcagttaatgaccgat
ggtggtcagctagctgttattgataaggtaatgagtaaaggctttggttggcctatggga
ccggctctgttacttgacgtgattggcctagatacagctgcacattgtattgatgtgatg
gctgaagctttcccagaacgcatgtacaagcctgagatcaacttgattcagaccttggct
gaccgcaaagactttggtcaaaaaactggtcaaggtttctatcgtcacagtgccgataga
cgaggccgtattaagcctagcaattgtcctgagtcaaatgaattgatcgaaagtatggtc
aagcctacccaggaatttgatgcagaaacgatcactatgcgcatgatgttgcctatgatg
tttgaagccattcgttgtttagatgaaggcgttgtagcatcggctcaagaagcggatatc
gctttggtttatggtacaggattccctccattcagaggtggtatcttctactacatggat
cagattggtgcccaaggtctattagacctagctgagcgctatcaagatcttggagcctta
tatcacgcgccagaaagcctgatcgaacgagccaagtctaaccgtaaattttacgcctaa
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