Setaria viridis (green foxtail): 117837589
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Entry
117837589 CDS
T07951
Name
(RefSeq) nuclear-pore anchor isoform X1
KO
K09291
nucleoprotein TPR
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117837589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117837589
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117837589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Cep57_CLD_2
Motif
Other DBs
NCBI-GeneID:
117837589
NCBI-ProteinID:
XP_034573189
LinkDB
All DBs
Position
1:complement(37261994..37283924)
Genome browser
AA seq
2054 aa
AA seq
DB search
MPLFISDEELRLLGGDTAAVAERADAAIRELRRQVDTVRAEADAAAIAAEQTCALLEQRY
ASLSAEFDRSQAEAAELTAAAERRAAELASSQAEIHQLRIQAIAKDGEVERLKVEISELH
KSKCQSLELIEQRDAEIKEKDGIIQSYYDKIVNLADSSAGKGARVQEVEAKFTHCQAMCN
RITQEKELLEKHNLWLDEELKVKVKNLAELRKTNMDEEARMSARIAELEREISESSSSLR
RGKERISELEQRVSYMEKELCSTKDAAAANEQRLGAELSTVMKLAELHKESSEEWSKKAG
ELEGVIKALETHLTQVEDEYKEKLEKETLFRRDLEKEAANLKQKLEKCEFDLENTRKSSE
LSLIPLTSVAADSTALIDARIQELPISDELNQNDLMVVPKVPSGVSGTALAASLLRDGWS
LAKIYEKYQEATDAFLHERRGRRHAEAVLERVLHEIEEKAELILDERAEHERMVEAYALM
DQKLQQALLEHDNFENIIRNLKSELKRRERDHSVAQKEIDDLQKQVAVLLKECQDIQLRC
GSSLPNVNNGAFSASIGSVLSNVEQNMKDNQIAFKDINGLVQQNVQLRNQVHMLSADLDK
KDMELRESFQIELKKITDDAASRVEKVMKKSEEQAIMIESLHRSVAMYRKLCEEQQKTRS
NVESVPSNLQDSDRTDLMVLFEGSQEVSKKAYEQVSERARSLDEELTKLRTELVSLRSER
DKAVLEAGFARDRLNGFTAELEHQRKETNSISLRNAELMHLIVDYERRLREDSDSKQAFE
ENSRKILMEVSMLKHEKEILEKSEKRALDEVHDLTERVHRLQATLDTIHTTEEVRENARS
MERRNHEEHIKRLERDWAELKKELQEQRDHVRVLTLDKKNTFDSCMKQVEDMRKELQSSL
KAASDAESRAAIAEAKCSDLEAKLKSRKVIFRDAGRDISATSEENDELFQLKEELEKYKE
EAQANKNYMVQYKEIAHSNEVALKQLESAHQDYKEEAEVGRKALEDEIAKLRDKLSDMEK
SYVMKCEEAASAIESKEKQITSLMNEISVLRTDVSQRLPQVEKLEMELASSKSALDEQYK
RWRTAQENYERQVILQSETIQELTNTSKQLSSLQHEITILRQTADAQKAENDALRTLGEQ
EKVGLLKEKDDALRKYNELNDQNKILHNQLESLHIRLAEKERSAAGLSSQRTDSHAEDDL
HSVISYLRRSKEIAETEISLLKQEKSRLQIELESALKSAKEAQDLLRSQVDNARTLMLKD
EEFKSLQLQVREINLLRESNIQLREENRHNFEECQKFRDEAQKAKMESERLQSLVLEKEV
NAEICKKELEMQKAEIANLNQRISELVENNKGIDLNTYEGMKNELQNIKSTLRETSMELE
SAKKLLSEKEVAIRNLEEKLAVSQSELDSREKKLNDVEASLKSEMDRLKKINFSIKRKLD
NLIKEKEEVIKENQSLQKQMEDLKSSQKTMSENTLEQAIKEKDFRIQTLERTLEKERDDN
KKEKANRKRNEKLQLNILQRVQQEKKQVEESIEKHKQAVKEVIENYPGLSSEVPPVSALE
EQVLSYFRTAKDMEESSSPFRDAAVTQTPAVETAPVDAPTSVAGRPVDTPPRLTKPKMME
DRAVATLPKPSTELRRPGGRRPLVRPTLERTEEPQADTDTSAVDVSMVGQDKGGSSLERE
ASGSLPVSQPSSRKRLISSAQTIDSAAQGEANDANPPSKKPKEEEASQGTSELKSGQPPV
GDVSTHVGVLPSTDDQDGQQSTEEMDADQASTPMEEVEATKDDDMGDKDDSGAHVDASLD
TKGQDADVSIEINAVPVEDVLAKSDALVESFDDDQKIEDLKEDAQLTTATDVDDEMEEGE
LPEEPEQPLESALGETNREPTSDIGEQAGNVFRAASPGMLTEKSDVDVSEVEGDTTSEHA
AVEPDQSPVAQSGTADSPSRAADASPAREPSPNPVQAGAFSRPQNTSTTTEAREPSSNPA
QAGASSEPRNTSTVTEATETRSRTINLTERARQNRQTRFQQRAQQPATARGRGQLTQRKD
AAGRGSRGRGGRQT
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgttcatctccgacgaggagctccggctcctcggcggcgacacggccgctgtc
gccgagcgggccgacgccgccatccgcgagctccggcgccaggtggacaccgtccgtgcc
gaagcggacgccgccgcgatcgccgccgagcagacctgcgccctcctcgagcaacgctac
gcctccctctccgcggagttcgatcggtcccaggccgaggccgccgagctcaccgcagct
gcggagcgccgcgccgccgagcttgcctcctcccaggcggagatacaccagcttcgcatc
caggcgattgctaaggatggcgaggtagagaggctgaaagttgaaatctccgagctgcac
aagtcgaagtgtcagtcgctggagttgattgagcagagagatgctgaaataaaagaaaag
gatggcatcatccagagctactacgataaaattgtaaatctggcagacagttctgctggt
aaaggggctagggtacaagaggttgaagccaagtttacccattgtcaggcaatgtgcaac
cgcattacccaggagaaggagctgcttgaaaagcacaatctgtggcttgatgaagaactg
aaagtaaaagtgaagaacttagctgaactaaggaaaacaaatatggatgaggaggctagg
atgtcagctaggattgcagagcttgaaagagagatttctgaatcttctagctctttgagg
cgaggcaaagaacgtatctctgaactggagcaaagggtatcttacatggaaaaggaattg
tgctcaacaaaggatgctgcagctgctaatgaacaacgtctgggtgctgagctttcgact
gtcatgaaacttgctgaacttcacaaagaaagttctgaggaatggtcgaagaaggctggg
gagcttgaaggtgttattaaagcattagagacacatctgacccaagttgaagatgaatac
aaggaaaaacttgagaaggagaccttatttaggagagaccttgaaaaggaagctgccaac
ttgaagcagaagcttgaaaagtgtgaatttgatttggagaatacaaggaagtccagtgaa
ttgagcctcattccattgaccagcgttgcagcagactctactgctttaatagacgcaaga
atacaagaactgcctatttctgatgagttgaatcagaatgacctaatggttgtcccaaag
gtacctagtggtgtttctggaactgcattagctgcttctcttcttcgtgacggttggagt
cttgctaagatctatgagaaatatcaagaagctactgacgcttttcttcatgagaggcgg
gggaggagacacgctgaagcagttctggaaagggtcttgcatgaaatagaagagaaggct
gaacttatcctagatgaacgagctgagcatgagagaatggtcgaagcttatgctctaatg
gaccagaaattgcagcaagcattgctggagcatgataatttcgaaaatattattaggaat
ctaaagtctgagctgaaaaggcgggaacgtgatcatagtgtggcacagaaggaaatagat
gacctgcaaaaacaagtcgctgttcttctgaaagaatgtcaagacatacagcttcgttgt
ggttctagccttcctaatgtaaataatggtgctttttctgcaagcataggcagtgttctt
tccaatgtagagcagaatatgaaagacaatcagatagcttttaaagatatcaatgggtta
gttcagcaaaatgttcaacttcgaaatcaagttcacatgctctcagctgatcttgacaaa
aaggacatggaattacgggagagcttccaaattgagttgaagaaaattactgatgatgct
gcatctagggttgaaaaagtgatgaagaaatctgaagaacaagcaataatgattgaatct
cttcatcgatccgtggcgatgtatcggaagctctgtgaggagcagcagaagactcgttcg
aatgttgaatcagtacctagtaatttgcaagatagcgacagaacggacctgatggttctg
tttgaaggatcacaggaagtctcaaagaaagcttatgagcaagtctccgagcgagccaga
agcctcgatgaagagctgacaaagttgaggactgagcttgtgtctctgcggtctgagcgt
gataaggcagtgcttgaagctggttttgctcgggatagacttaatgggtttacagcggag
cttgagcatcagaggaaggagactaattccatttcactcagaaatgcggagttaatgcat
ttgatagttgattacgaacgtagacttcgtgaagattcggattctaagcaagcttttgag
gagaactcaaggaagatattgatggaggtctccatgttgaagcatgaaaaagagattcta
gagaagtcagagaaaagagctttggacgaagtccatgatttaacagaacgagtgcatcgt
ctgcaggctacgctcgacacaatacataccactgaggaggttcgagagaatgcaaggtct
atggaaaggagaaatcatgaggagcacattaagcgactagaaagggattgggctgagctt
aagaaggagcttcaggagcagcgagaccatgtccgtgttctgacccttgataagaaaaat
acgtttgacagctgtatgaagcaggtggaggatatgagaaaggagctgcagagctcgttg
aaagctgcttctgatgctgaatcaagggctgccattgcggaggccaagtgttccgattta
gaggcaaagctgaaatcaagaaaggtcatttttagggacgctggccgtgacatctcagcc
acatctgaggagaatgatgagctattccagttgaaagaggagttagaaaagtacaaggag
gaagcgcaagcaaataagaactacatggttcagtacaaagaaattgcgcactccaatgaa
gttgcgttaaagcaattggaatctgcccatcaagactacaaggaagaggccgaggttggc
aggaaagccttggaagatgagattgctaaattgagggataagttatctgacatggagaag
agctatgtgatgaagtgtgaagaagccgccagtgcgattgagtctaaagagaagcaaatc
acctctctcatgaatgagatttctgttctaaggacagatgtttctcagagattaccacag
gtagaaaaattagaaatggaattggcttcctcaaagagtgcactagatgagcagtacaag
cgttggcgaactgcccaagaaaattatgaacggcaggttattctgcaatctgaaacaata
caggagctgacaaatacttctaagcagctttcttcgttgcagcatgaaatcactattctt
cgccagacagcagatgcgcaaaaagctgaaaatgatgccctaagaacacttggtgagcaa
gaaaaggtaggattattgaaagaaaaggatgacgccctgcggaagtataatgagctgaat
gatcagaataaaattctacacaatcagttagaatctttacacattcggttagctgagaaa
gaacgaagtgctgctgggctttcatctcaacgtaccgactcgcatgcagaagatgatctt
catagtgtcatcagctatctgcgcagatcaaaagaaattgctgaaacggagatatcattg
ctaaaacaggagaagtcacggcttcagatagaactggaaagtgcattaaagtctgcaaag
gaggcacaggacttgctgcgcagtcaggttgataatgccaggacattaatgctcaaggat
gaagaattcaagtcactgcagctccaggtcagagaaattaacttgcttcgtgaaagcaac
atacagcttagagaggagaataggcataattttgaagaatgccagaaattccgcgatgaa
gctcaaaaggctaaaatggaatctgagagattgcagagccttgtactggagaaggaggta
aacgctgaaatctgcaaaaaggaactagaaatgcagaaggccgaaatagcaaatctcaac
caaaggatttctgagttggttgaaaataacaaaggcattgatttgaacacttatgagggc
atgaagaatgaacttcaaaatatcaaatcaaccttgagagagacatctatggagcttgaa
agtgcaaaaaaacttctttctgagaaagaagttgctataagaaatttggaggagaagctt
gctgtcagtcagtctgaattagattccagggaaaagaagctgaatgatgtagaggcatcc
ctgaaatctgagatggacaggcttaagaagattaatttctccattaagagaaaacttgac
aacttgataaaggagaaggaagaggtcattaaagaaaatcaaagtctacagaaacagatg
gaggatcttaaatcaagtcagaagacaatgtcagaaaatacacttgagcaagctataaaa
gaaaaggatttcaggatacagacactggaaagaaccctggagaaggagagagatgataac
aagaaagaaaaagcaaaccgtaaaaggaacgagaaattacaactgaatattcttcaaagg
gttcaacaggagaagaaacaagtagaagagtctatagagaagcataagcaggctgtgaaa
gaggtgattgagaactatcctggactatcatctgaagtcccacctgtctctgcactggaa
gagcaagttctttcatacttccgcacagctaaagatatggaagaatcttctagtccattc
cgcgatgctgcagttactcagaccccagctgttgaaactgcccctgtggatgcacctact
tcagttgcaggtcgaccggtagatactccaccaaggctgactaaacctaaaatgatggaa
gatagagcagttgctactttgcccaaaccaagcactgaactacgtagacctggaggaaga
agacctcttgtgcgtcctactcttgaacgaactgaagaaccacaggctgatacggataca
tcagctgttgatgtctcgatggttggtcaggacaaaggtggctcgtcactagagcgtgaa
gcttctggcagtttacctgtgtcacagccttcaagtcgtaaacgtctcatatcgtctgcg
caaacaatagacagtgccgcacaaggtgaggctaatgatgccaaccctccatctaagaag
cccaaggaggaagaagcttcgcaagggactagcgagctcaaaagtggccaaccacctgtt
ggggatgtatcgacacatgttggtgtgcttccatccactgatgaccaagatgggcaacaa
tctacagaagagatggacgctgatcaggcatccacaccaatggaagaggttgaggcaaca
aaggatgatgacatgggtgataaagatgactctggagcacatgtggatgcatcattggac
actaaaggccaggatgctgatgttagtattgaaataaacgcggttcccgtagaagatgtg
ctggcaaagtcagatgcattagttgaatcatttgatgatgaccagaaaattgaagacttg
aaggaagatgctcagcttactactgcaactgatgttgacgatgagatggaggagggagag
ttaccggaggaacctgaacaacctttagaaagtgcacttggagaaactaatagggagcct
acttcggatattggtgagcaagctgggaatgttttcagggcagcatctccaggaatgctg
acagagaagagtgatgttgatgtgtcagaggttgagggtgatactacgtctgaacatgct
gcagtggaaccagaccaaagtccggtagcacaatcaggaactgctgattcaccaagcaga
gctgctgacgcatctcccgcacgtgaaccttcccctaatccagtccaagctggagcattt
tctcgaccacagaataccagcactacaacagaggcacgtgaaccttcctctaacccagcc
caagctggtgcatcttctgaaccacggaataccagtactgtaacagaggctactgaaact
cgttccagaacaatcaacttaactgagagggccagacaaaataggcaaaccaggtttcaa
caacgtgcacaacaacccgccactgccaggggtcgtgggcagctaacccagaggaaagat
gctgctggccgaggatccagggggcgcggggggcgtcagacttag
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integrated database retrieval system
