KEGG   Setaria viridis (green foxtail): 117839461
Entry
117839461         CDS       T07951                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03030  DNA replication
svs03410  Base excision repair
svs03420  Nucleotide excision repair
svs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117839461
   03410 Base excision repair
    117839461
   03420 Nucleotide excision repair
    117839461
   03430 Mismatch repair
    117839461
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:svs03032]
    117839461
   03400 DNA repair and recombination proteins [BR:svs03400]
    117839461
Enzymes [BR:svs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     117839461
    6.5.1.6  DNA ligase (ATP or NAD+)
     117839461
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     117839461
DNA replication proteins [BR:svs03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    117839461
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     117839461
DNA repair and recombination proteins [BR:svs03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     117839461
   NER (nucleotide excision repair)
    Other NER factors
     117839461
   MMR (mismatch excision repair)
    Other MMR factors
     117839461
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 117839461
NCBI-ProteinID: XP_034575689
LinkDB
Position
9:15218928..15227542
AA seq 907 aa
MFLRATSTTTSTLLLRCHPLPSPKTLALAPPPSLLSFSLRPRLFAASSSSASAAAPRRRA
AAVAAEAESGEKKPPAARAKRAGAVPAPAAAGMSASGGGAGGKRTVADVLMGNARAAASK
AKKAAPSPKKPRAQADGAEAEPAEAAAVAEKPPSPVRSKRASSPAKSPKSPADGAAGEKK
RSTSPAKSKGPAAAAQLDGAKENSPSPKRSKTLAAKSDTVSQTDGKKKRSPSPTKAKGQA
SQPEEKKQPASLKNAKPTDSPKSEEKNTTLELKKKGSEFDPMAAAYWKPGEPVPFLFLAR
ALDLISNESGRIVITEILSNVFRTVMATTPDDLLATVYLSANRIAPPHEGIELGIGDASV
IRALAEAYGRKEEHVKKDLKELGDLGLVAKASRSSQKMMFKPKPLTISRVLSTFRTIAKE
SGKDSQDKKRNHIKGLLVAATDCEPQYITRLLQSKMRIGLAEKTVQMALGQAAVYSDKKS
SPPEVQSPFEEAAKIIKQVYSVLPIYDKIVPALLEAGVWKLPETCKFSIGVPVGPMLAKA
TKSVSEIIDKFQGLEYTCEYKYDGERAQIHCMEDGSVEIYSRNAERNTGKYPDVVDAVSR
FRKPTVKSFVLDCEIVAYDREKKKILPFQILSTRARKGVTVNDIKVSVCTFGFDILYMNG
KPLLQEQLKIRREHLYNSFEEVPGVFQLATAITSNDLEEIQKFLDTAVNSSCEGLIIKTL
DKDATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIAAFYGRGKRTGVFGSFLLACYDEQN
EEYQTICNIGTGFSEQQLEERSSSLRSKVIEKPKAYYRFADTMDPDVWFEPSEVWEVKAA
DLSISPVHRAANGIVDPNKGISLRFPRLLRLRDDKSPEQATTSEQVADMYRAQKINHGYN
QEDEDDD
NT seq 2724 nt   +upstreamnt  +downstreamnt
atgttcctccgagccacctccaccaccacctccacgctcctcctccgatgccacccgctc
ccctcgcctaaaaccctagccctcgccccgcctccctccctcctctccttctccctccgc
ccccgcctcttcgccgcctcctcctcctcggcatccgccgccgctccccgccgccgggcg
gccgcggtcgccgccgaagccgaatccggggagaagaagccgccggcggccagggcgaag
cgggccggcgcggtacccgcaccagcggcggcgggaatgtcggcctccggtggcggcgcc
ggggggaagcgcacggtggcggacgtgctgatggggaacgcgcgggccgcagccagcaag
gcgaagaaggcggcgccgtcaccgaagaagccccgggcgcaggccgacggcgcggaggcc
gagccggcggaggccgcggcggtggcggagaagccgccgtcgccggtgaggtccaagcgg
gcgtcgtcccctgcgaagtcccccaaatcgccggctgatggggcggctggcgagaagaag
aggtccacgtcgccggcgaagtccaagggtccagctgcggccgcgcaattggatggagcg
aaggagaattccccctctccgaagaggtccaaaaccctagcggccaaatccgacactgtc
tcgcagacggatgggaagaagaagaggtcaccctcaccgaccaaggctaaaggccaagct
tctcaacccgaggagaagaagcagcccgcttcactgaagaatgccaaacccacagattcc
ccaaagtctgaagagaagaataccaccctagagctcaagaagaaaggcagtgagtttgac
ccgatggctgctgcctattggaagcctggtgagcccgtgccattcctgtttctggctcgg
gcacttgatctcatctccaacgagagtggccggattgtcattactgaaatcctatcaaat
gtgttccggacagtgatggcgacgacaccggatgatctccttgcaacggtgtacctctca
gccaatcggattgcgcctcctcatgaggggattgagctcggaattggggatgcatcagtc
atccgtgcacttgcagaagcatacggacgcaaagaggagcatgttaagaaggaccttaag
gaattgggtgatttggggcttgtggcgaaagcaagcaggtcatcgcagaagatgatgttt
aagccaaaaccactgacaatatctcgggtgcttagcacttttcggacaattgcaaaggag
tcaggcaaagacagccaagataaaaaaagaaaccatatcaagggacttcttgttgctgcg
actgactgtgaacctcaatacattacacgtcttcttcagtcaaaaatgaggatcggcctg
gcagagaaaactgtccaaatggctcttgggcaagctgccgtatattctgacaaaaaatct
tcaccaccagaagttcaatcacctttcgaagaggctgcaaaaataattaaacaagtatat
tcagttcttccaatctacgataaaattgtcccagcactacttgaagctggagtttggaag
cttccagagacatgcaaattttccataggtgtacctgttggtcctatgttagcaaaagca
acaaaatctgtctcggagatcattgacaagtttcaggggcttgagtacacttgtgagtac
aagtatgatggtgaaagggctcagatacattgcatggaggatggttcggtagagatttat
agtcggaatgctgaaagaaacaccggaaagtatccagatgttgttgatgcagtttctaga
ttccgaaagcctacagttaaatcatttgtcttggactgtgaaattgttgcctacgatcgt
gaaaaaaagaaaattttgccttttcagatacttagcacaagggcccgcaaaggtgttacc
gtaaatgacatcaaagtttctgtctgtacttttggctttgatattctttacatgaatggg
aaacctctcctccaggaacaactcaaaattcgtcgagagcatctttacaactctttcgag
gaagtaccaggtgtttttcaattggcaactgcaattacatcaaatgacctggaggagata
cagaaatttcttgacacagctgtcaactccagttgtgaagggttgatcatcaagacattg
gataaagacgctacatatgagccagcgaagcgatcaaacaattggttgaaactgaagaag
gactacatggatagtattggagactctttggacttggtaccgattgctgccttttatggg
agaggaaaacggacaggtgtctttggatcattcctcctggcatgctatgatgagcagaat
gaagaatatcaaacaatatgcaacataggtactggattttctgagcaacagctcgaagaa
cgttcttcaagccttcgaagtaaagtgatagaaaagcctaaggcatactacagatttgct
gacacaatggaccctgatgtatggtttgagccgtcagaggtgtgggaggttaaagctgca
gatctgagcataagtcctgtgcatcgtgctgctaacggtatagttgatccaaacaagggt
atctccttaagatttcctcgtttgttgcgattacgtgatgataaaagcccagaacaggcg
accacatctgagcaagtcgcggacatgtaccgggctcaaaagatcaaccacggttataac
caggaggatgaggatgatgactga

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