Setaria viridis (green foxtail): 117846609
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Entry
117846609 CDS
T07951
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117846609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117846609
Enzymes [BR:
svs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
117846609
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117846609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
ATP_bind_1
AAA_22
CbiA
ABC_tran
SRPRB
MMR_HSR1
AAA_29
FtsK_SpoIIIE
AAA_24
AAA_10
Motif
Other DBs
NCBI-GeneID:
117846609
NCBI-ProteinID:
XP_034583730
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Position
1:2955860..2960639
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AA seq
437 aa
AA seq
DB search
MAATAAAGAAAAPPPRQSKLEPREELRVEVPPDASLRVRLVAGTAEIFGTELPPEGWVSI
PPRSKIAIFSWHGATLELDGPTESEYPSVETPMVIYVNTHAILDARRARARAAAAQGGDL
EASQGPRVIVVGPTDSGKSTLCRMLLSWAAKLGWKPTYVDLDIGQGSITIPGCISATPIE
KPIDIVDGIPLDMPLVYFYGHPTPSINPDVYKVFMKELAKTLERQFSGNAESRAAGMVIN
TMGWVEGLGYELLLNAIETFKANVVLVLGQEKLWKMLKDAVQSKPNIDVVKLQKSEGVVL
RNSKYRQKTRSFRIKEYFYGIANDLAPHSNIVNFSDVSVYRIGGGHQAPRSALPIGAEPV
ADPTRLVAVNISTDMIHTVLAISYAKEPDEIISSNVAGFIHVTDVDIQRKKLTYIAPCPG
DLPSRLLIASSLTWYEA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggcggctacggcagccgcgggggccgccgccgcaccgccgccgcggcagtccaagctg
gaaccgcgggaggagctgcgcgtggaggtgccccccgacgcgtccctccgcgtgcgcctc
gtcgccggcacggcggagatcttcggcaccgagctgccccccgagggctgggtctctatt
cctccccgctccaagatcgccatcttcagttggcacggcgcgacgttggagctggacggg
cccaccgagagcgagtatccttccgtggagacaccaatggtgatttacgtcaacacacac
gccattcttgatgcgcgacgggcaagggcaagggctgctgcagcacaggggggtgatttg
gaggcctcgcagggacctagagtgattgttgtgggaccaacagattctggaaaaagtacc
ctctgcagaatgctccttagctgggctgcaaaattgggctggaagcctacatatgtggat
ttagatatcggccaggggtctataacgatccctggatgtatttctgctaccccaattgag
aaacctatcgatatagttgatgggattcccttggatatgccactagtttacttctatggc
cacccaactccaagtatcaatccggatgtctacaaagtttttatgaaagagctagctaaa
acattggagagacaattctctggcaatgctgaatctagggcagcaggaatggttatcaat
accatggggtgggttgaaggccttgggtacgagttacttctaaatgcaattgaaactttc
aaggccaatgtagtgctggtactgggacaggagaaactctggaagatgttaaaggatgca
gttcaaagcaagcccaacattgatgttgtaaaacttcagaaatcagagggtgttgtcctc
agaaattcaaaatatcgccaaaaaacaagaagcttccgaatcaaggaatacttttatggg
attgcaaatgatctggcgccacattcaaacattgtcaatttcagtgatgtctcagtgtac
agaattggtggtggccatcaagctcctcgttcagcattgcctattggtgcagagcctgtg
gcagatcctactcggcttgttgctgtcaacatcagcacggatatgatccatacagtgctt
gctatttcttatgctaaggaacctgatgaaataatttctagcaatgttgccggattcatc
catgtcacagatgtggacatccaaaggaagaagctgacgtacattgcaccttgcccgggg
gacttgccaagcaggctgttgattgcaagctcgctgacatggtatgaggcctga
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