Setaria viridis (green foxtail): 117858175
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Entry
117858175 CDS
T07951
Name
(RefSeq) sphingosine-1-phosphate lyase
KO
K01634
sphinganine-1-phosphate aldolase [EC:
4.1.2.27
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs00600
Sphingolipid metabolism
svs01100
Metabolic pathways
Module
svs_M00100
Sphingosine degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
117858175
Enzymes [BR:
svs01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.2 Aldehyde-lyases
4.1.2.27 sphinganine-1-phosphate aldolase
117858175
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Motif
Pfam:
Pyridoxal_deC
Aminotran_5
Aminotran_1_2
NifW
Motif
Other DBs
NCBI-GeneID:
117858175
NCBI-ProteinID:
XP_034597084
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Position
5:complement(5112845..5118537)
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AA seq
535 aa
AA seq
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MEAAAELALRLRAAANDRLARYEPLALVAAPLLALLVARTLHAAASAVADRGLVAIAIAA
VKLLPGVSGYIAAEKKKVVDKMQSGGTSTKNNRRAELPTIGLGEQVIKDLETLKAKDVEW
QGKCSGTVYIAGSESEGHFELINKAYSMFSHTNPLHQDVFKSVAHMEAEVVAMTAALLGS
KEKSSGGQICGNMTSGGTESILLAVKTSRDYMRSKKGITKPEMIIAESAHSAYDKAAEYF
NIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASRYDICL
HVDLCLGGFVLPFARKLGYPIPPFDFSVKGVTSISSDVHKYGLAPKGTSVVLYRNHEIRK
HQFVAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMMSVGLNGYLDSTSRIMEVSKKIQRG
IEEIPGLFVIGKPDMTVVAFGSDVVDIFEVNDIMSSKGWHLNALQRPNSLHICVTLQHTN
IYGEFLKDLQDSVNTVKANPGPISGGMAPIYGAAGKMPDRGTVRELLVEFMDSSC
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcggcggagctggcgctgcgcctccgggcggcggccaacgaccgcctcgcc
cggtacgagccgctggcgctcgtcgccgcgccgctcctcgcgctcctcgtcgcccggacc
ctccacgccgccgcgtcggccgtcgccgaccgggggctcgtcgccatcgccatcgccgcc
gtcaagttgctgccgggagtctctggctacatcgcggcggagaagaagaaggttgttgac
aagatgcaatctggtgggacctcgaccaagaacaaccggcgagctgagttgccaactatt
ggccttggcgagcaagtgataaaggatcttgaaacattgaaagccaaagatgtagaatgg
cagggaaaatgctccggcacagtatatatcgctggaagtgagtccgagggccattttgaa
ttgataaacaaggcttactctatgttttcacacaccaatccgctgcatcaagatgtattc
aagagtgtggcacacatggaagctgaagtagttgcaatgacagctgctttgctgggcagc
aaagaaaaatcatctggtggacaaatttgcggcaacatgacatctggtggaactgaaagc
atactattagcagtcaaaacatcacgtgactatatgcgatcaaagaaaggaattacaaag
cctgaaatgataattgctgaatcagcacattctgcatatgacaaggctgctgaatatttc
aatattaaagtgcggcgagtgcctgtgaacaaagagtttcttgcagatgtgaaaggattc
aagcgatgcataaatggaaacaccataatgatggttggatctgcaccaggatttccgcat
ggtttaatcgatcctatcgaggaacttggtgaactggcttcgcgctatgacatttgtttg
catgttgatttatgccttggtggctttgtattgccttttgcccgtaagcttgggtaccct
attcctccttttgatttttctgtgaagggcgttacatcaatctcatcagatgttcataag
tacggattagctccaaagggcacaagtgttgtcctgtacagaaatcatgaaattagaaag
catcaatttgttgctgttactgagtggactggtgggctttatgtttctcccaccattgct
ggaagcaggccaggtggattaattgcaggagcttgggctgctatgatgtctgtcggactg
aatggctacttggacagtacaagtcgtatcatggaagtttcaaagaaaatacaaagaggg
attgaagagatcccagggttgtttgtgattgggaaaccagacatgaccgttgtggcattc
ggctcggatgttgtcgacatatttgaggtgaatgacataatgtcgtcaaaagggtggcac
cttaacgctctgcagagacctaacagtttacacatttgcgtgaccctccagcacacgaat
atttacggggaattcctgaaggatctgcaagattctgtgaacactgtgaaagcaaacccg
ggtcctattagcgggggaatggctcccatctatggtgccgcagggaagatgccggacaga
ggcacggtcagggagcttcttgtggagttcatggacagctcttgctga
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