KEGG   Setaria viridis (green foxtail): 117859914
Entry
117859914         CDS       T07951                                 
Name
(RefSeq) DNA-directed RNA polymerase D subunit 2b-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    117859914
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:svs03021]
    117859914
Enzymes [BR:svs01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     117859914
Transcription machinery [BR:svs03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     117859914
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 117859914
NCBI-ProteinID: XP_034599000
LinkDB
Position
6:3782717..3790496
AA seq 1257 aa
MGKLQADGDQSPDVADIDMMDFLNLDGDGEGDSPRKDSTKGDRQPSVDADVDQFAMDVDL
EGLPSVQDQGKEKQSAAMDVDITGIPPVEDERQSSLDLSTLVPVDFNVASLEKFCNEASR
SFFSETGLVSHQINSYNDFVSHGLQDLLDSFGEVTVEPDYDPSNKPSNKDGAWKHATIKF
GKVKLEEPVFRVENSDLEVQDLKLKPRHALLQKMTYSSRMNVEITVQVYTVDKIDKAKTG
NAMHVSRRDIMKETKQVSIGMLPVMVKSNLCWLHKLQESECQFDSGGYFLIKGTEKVFIA
EEQRCLSRIWISDRPSLDASYLSVIKREKIHVKLVQSKRNENRKVINISFLGAVMPIWVV
FFALGVSSDKEAFDMIDIQDCDASLLNIISSTVKESHEECEGFRAPGRARQYVDKLIRKT
KFPPEESFDEYVSKYMFPDVKGTRSKAIFLGYMVKCLLMAYSGNRKCDNKDDFRNKRLDL
ACQLLRREIWLHINSIQRRMVKLMQRDLSSDGNLQDLRRYVDASIVTNGLNRAFSTGSWR
HPYKSERCSGVVATLRRANPLQMMSDLRKTRQWFAYSGTTGDARYPNPSYWGKLCFLSTP
DGEKCGFVKNLAVTAMVSSAVKKQLCIDTFVSCGMKKLDDKIPLQDISGKDRIFLNGNLL
GVCADPGDLVSRLRSLRRSKLIEPQVEIKRDRHHKEIRVFSDPGRILRPLLVVENLRRIT
RPKAGLYSFQELMHQNIIELIGVEEEEDIRCAPGIRHLFTREKEEGPSDYTHCELDPSFL
LGLSCSLIPFANHDNARRVLMQAEKLSQQAIGYLPTNSRSRFDTLSQIFYPQRPLFKTVV
ADCLGKPDYSFGRKGDFTTPEYFNGQNAIVSVNVHQGFNQEDSLVLNRASLERGMFRTLH
FKSYKAHVENKEITRRLKHKEKISFGKVQSKRGKVDSLDNEGLPYVGASLQSGDIVIGKV
TESGEDHSLKLMHTEKGMVEKVLLSANDDGMNFATVTLRQSRSPCVGDKFASMHGQKGVV
GLLDSQENFPFTCQGIVPDIVINPHGFPTRQTPGQLLEAALGKGIALGGKVRYATPFTTP
SVDVITEQLHKAGFSMWGGESVLNGQTGERMKSLVFIGPTFYQRLIHMSEDKVKFRNTGP
VHPLTRQPVEDKKRFGGVKFGEMERDCLLGHGAAASLHERLFMLSDFSQMHICQACERVA
NVIMRPDDCGKKVHGPYCLFCRSAERIVRINVPYGAKLLYQELFSMGICLKFETEVR
NT seq 3774 nt   +upstreamnt  +downstreamnt
atggggaaactgcaagcggatggtgatcaatcacctgatgtcgcagatattgacatgatg
gatttcctgaatttggatggcgatggagaaggtgactcccccagaaaggacagcacaaaa
ggggaccggcagccttctgtcgatgctgatgtggatcagtttgccatggatgtagatttg
gaaggactgccatctgtgcaagatcaagggaaagaaaagcagtctgctgctatggatgtc
gatataacaggaataccacctgtggaagatgaaaggcagtcttctctagacctaagcacg
ttagtcccagttgacttcaatgttgcaagcctggagaaattttgcaatgaagcgtcaaga
tcattcttcagtgagactggactggttagccaccagataaattcgtataacgattttgtc
tctcatgggctccaggatctccttgattcttttggggaagttactgtagagcctgattat
gacccttcaaataaaccttcaaataaagatggtgcttggaaacatgcaactatcaaattt
ggtaaagttaaacttgaggagccagtgttcagggttgaaaacagtgatcttgaagtgcaa
gatctcaagttgaagcctagacatgctctcctccagaagatgacatattcatccaggatg
aatgtagaaataactgttcaggtttatacagtcgacaaaattgataaagccaaaactggt
aatgctatgcatgtttctagaagagatataatgaaagaaactaaacaggtcagcattgga
atgttacccgtcatggtgaagtcaaatttgtgctggctgcataaacttcaggaaagtgag
tgtcagtttgattctggtggctactttttgatcaaagggacggaaaaggtattcattgct
gaagagcagagatgtttatccaggatttggatctcagatcgacccagcttggatgcaagt
tacctgagtgtaatcaaacgagaaaagatccatgtaaaacttgttcagtctaaaaggaat
gaaaaccgcaaagtcatcaacatttcctttctgggtgcggttatgccaatctgggtagtg
ttttttgcactaggtgtgtcatcagataaggaagcttttgatatgattgatatacaggac
tgtgatgcttctttgctcaacataatatcatcaactgtgaaagaatctcatgaagaatgt
gaaggctttcgcgctcccggtagagctcgtcagtatgttgataagctgatcagaaaaaca
aagtttccaccagaagaatcctttgatgaatatgtttccaagtatatgtttcctgatgtc
aaagggactaggagcaaggcaattttcttgggctacatggtcaaatgcctgctaatggct
tactctggcaatcgaaaatgtgataataaggatgatttccgtaacaagaggctagatctt
gcctgccagttgcttcggagagaaatctggttgcatattaattctatacaaagacgcatg
gttaagctcatgcagagagatttgagctctgatgggaacttacaagatcttaggcgttat
gtggatgcatcaattgttaccaatggtttgaaccgggctttctccactggttcctggcgg
catccttataaatcagaaaggtgttcaggggttgtagcaacccttcggagagcaaatcca
cttcaaatgatgtctgacttgaggaagactcgacagtggtttgcatattctggaacaact
ggagatgcgagatatccgaatccatcctactggggaaaattgtgttttttgtccacccct
gatggtgaaaaatgtggattcgtgaaaaaccttgctgttactgctatggttagctctgca
gtgaagaaacaactgtgcattgatacatttgtttcttgtggaatgaagaaactggatgat
aaaattcctctacaagatatttctgggaaagacaggattttcttgaatgggaacctgctt
ggagtgtgtgcagacccaggcgatttggtttcacgtttaagaagcttgaggcgtagcaaa
ctaattgagccacaggttgaaatcaaaagggataggcaccacaaagaaattcgtgtattt
tctgatcccgggagaattctaagaccacttcttgtagttgaaaatctaagaagaatcaca
agacccaaagctggattgtactcatttcaggaacttatgcatcaaaatataattgagctg
attggtgttgaagaagaggaggatatccgatgtgctcctggaattaggcatctattcaca
agggagaaagaagaggggccttctgactatactcattgtgaacttgatccttctttcttg
ctggggttgagttgcagtctcattccctttgccaaccatgataatgctaggagggttctg
atgcaagcagaaaaattatcgcagcaggctattggctacttgcctacaaactcacgctct
agatttgataccctctcacaaatcttctatccacagagacctttgtttaaaactgtggtg
gcagactgtcttggaaagccagactacagctttggacgaaaaggtgactttactacacca
gaatatttcaatggtcaaaacgcaatagtctccgtcaacgttcatcagggatttaaccaa
gaagattctctggttttgaatagggcctctctagagcgtggcatgtttcgtacactacat
ttcaagagctataaagcccatgtcgaaaacaaagagatcaccagacgactcaaacacaag
gaaaagatcagttttggtaaagtgcaaagcaagagggggaaggttgacagtctggacaat
gagggtttaccatatgttggagcaagtcttcaaagtggtgacattgtcattgggaaggtc
acagaatctggtgaagatcatagtcttaaactgatgcatactgagaaagggatggtagag
aaggtacttctctcagcaaatgatgatgggatgaactttgcaactgttactctaagacag
tctcgttcaccatgcgtcggagacaagtttgccagcatgcatgggcagaaaggagtggtt
ggcctattggactctcaggagaacttcccatttacttgccaagggatagttccggacatc
gtcataaacccacatggctttccaactcgtcaaactcctggccagttgcttgaagctgct
ttggggaaggggattgccctgggtgggaaggtgagatatgcgacaccgttcaccactcca
tccgtggacgtgatcactgaacagttacacaaggccggtttttcaatgtggggtggagag
agcgtcctgaacgggcagaccggtgagcggatgaaatcactggtcttcatcgggccgacg
ttctaccagaggctcatccacatgtccgaggacaaggtgaagttccgcaacacaggacct
gtgcacccgctcacgcggcagccggtggaggacaagaagcggttcggtggcgtcaagttt
ggggagatggagcgagactgcctccttggccacggtgctgctgccagcctccacgagcgc
ctgttcatgctaagcgacttctcacagatgcacatctgccaggcctgcgagcgcgtggcc
aacgttatcatgcgccccgacgactgtggcaagaaggtgcacggcccctactgcctcttc
tgccggtccgcagagcgcatcgtccgaatcaatgtgccttatggagccaagctgctgtac
caggagctcttcagcatgggaatctgcctcaagtttgagaccgaggtccgctag

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