Setaria viridis (green foxtail): 117861307
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Entry
117861307 CDS
T07951
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03020
RNA polymerase
svs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117861307
09124 Replication and repair
03420 Nucleotide excision repair
117861307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117861307
03400 DNA repair and recombination proteins [BR:
svs03400
]
117861307
Enzymes [BR:
svs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117861307
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117861307
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117861307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
117861307
NCBI-ProteinID:
XP_034600730
LinkDB
All DBs
Position
6:4815274..4823917
Genome browser
AA seq
1852 aa
AA seq
DB search
MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI
DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK
FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKKRGGCGAQQPNITV
DGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTLIEKDVFMNTLMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQIN
LIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIKQAQDKHL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQ
LGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVP
GDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDI
DPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRIT
NDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVNKFDQSEGFKA
DNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADL
LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTP
YHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSPFPSPGGYSPSSGGYSPSSPVFT
PEKGYSPLSPSYSPASPSYSPTSPSYTPGSPTYSPTSPNYSPTSPTYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY
SPTSPSYNPSSAKYSPSHAYSPSSPRMTPYSQTSPNYSPTSPTYSPTSPSYSQPSPSYSP
TSPFNTSGGPSPDYSPTSPNYSPTGSYSPTAPGYSPSSTGQATNDKDDESAR
NT seq
5559 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgaggttcccgtactcgccggccgaggtggccaaggtccagctcgtgcagttc
ggcatcctcagccccgacgagatcagacaaatgtcggtgattcagatagaacacgcagag
accatggagagggggaagccgaagcctggtgggctcagtgaccctcgattggggactatt
gaccggaaaatcaagtgcgagacatgcatggcagggatggcggagtgtccaggccacttt
ggacaccttgagcttgccaagcccatgttccacattggcttcattaagactgtgctctcc
attatgcgctgtgtctgctttaactgctccaagatcctcgcggatgaggatgataccaaa
tttaagcaggctctgaaaatccggaatccaaagaatagattgaagagaatatatgatgct
tgcaagagcaaaaaggtctgtgcaggtggcgatgaccttgatgttcaggagcagcaagac
actgacgagcctgttaagaaaagaggtggttgcggtgctcagcagccaaatattacagtt
gatggtatgaagatggttgcagagtttaaagctccaaagaagaaaactgatgatcaagat
cagctccctgagccagtggaacgaaagcaaatcctctcagctgagagggtccttaatgtt
cttaagcgtataagtgatgaggactgtcttctgttgggtctgaatcccaaatttgcccgt
cctgattggatgatacttcaggttcttccgattcctccaccccctgttagaccatctgtc
atgatggacacttcttccagaagtgaggatgatttgacgcatcaattagctatgataata
cggcataatgagaacttgaggaggcaagaaagaaatggcgctccagctcacattataaca
gagtttgctcagctattgcaatttcatattgcgacgtactttgataatgaacttcctggc
caacccagggccacacagcgttctggaaggcctatcaaatcaatttgcagcaggctgaaa
gcaaaagaaggccgcattagaggaaacttgatgggaaagcgtgttgatttctcagcccgt
actgttatcacaccagatccaaatataaacattgatgaattaggagtaccatggagtatt
gctttgaacctgacatatcctgaaactgtgactccatataacatcgagaggttgaaggaa
cttgtggaatatgggcctcaccctcccccagggaagacaggcgcaaagtacattatcaga
gaagatggtcagaggcttgatcttcgatatgtgaagaaaagcagtgatcagcatttggag
cttggttacaaggtggagaggcacctcaatgatggggattttgttcttttcaatcggcaa
ccaagtcttcataaaatgtctatcatggggcatcgcatcaaaattatgccctactcaact
ttccggttaaacttgtctgtcacttcaccttacaatgctgattttgatggggatgaaatg
aatatgcatgtcccccagtcatttgagaccagggcagaagttctagagttaatgatggtg
ccaaaatgcattgtctctccacaatcaaataggcctgtcatgggtattgtgcaggacaca
ctgcttgggtgtcgaaaaattactaaaagggacactctcattgaaaaggatgtatttatg
aacaccttgatgtggtggcaagacttcgatggaaagattcctgcacctgccattttgaaa
cctaggccaatttggactgggaaacaagtttttaacttgattattcctaagcaaataaat
ttaattcggttttcagcctggcattctgaaacagaaacaggattcattactcctggtgat
acgatggtcaggatagagaagggagagcttctatctggtacactgtgcaaaaagagtctt
ggaacaggctctggaagtcttatccatgtcatttgggaagaggttggtccagatgctgca
cgcaagttcttaggtcatacacagtggcttgtcaactactggttgcttcaacaaggtttc
agtattggaattggggatactattgcagatgcggccaccatggaaaagattaacgagaca
atttctaaagctaagaatgaggtgaaggagcttatcaaacaagcacaggacaagcatttg
gaagctgagccaggacgcaccatgatggaatcatttgaaaatagagtgaaccaggttctt
aacaaggctcgtgatgatgctggaagcagtgcgcagaagagtttgtctgaaagcaacaat
ttgaaggctatggtcactgcaggctcaaaaggtagtttcattaacatttcacaaatgact
gcttgtgtcggacaacagaatgttgagggcaagcggataccatttggtttcatcgatcga
acgttgccacatttcacaaaagatgactatggtcctgaaagtcgtggttttgttgagaac
tcttaccttcgaggcctgacaccacaagaattcttctttcatgctatgggtggtagagaa
ggtcttattgatacagctgtcaagacttctgaaactgggtatatccagcggagacttgtg
aaagctatggaggacatcatggtaaaatatgatggtactgtaagaaactctctgggagat
gtcattcagtttctgtatggagaagatggtatggatgctgtttggattgagtctcaaaaa
ttggactcactgaagatgaagaagggtgagtttgacaatgtattccgttatgagctggat
gatgagaactggaggcctaactacatgcttcctgaacatgttgatgatttgaagacaata
cgtgaattcagaaatgtgtttgaggcagaggttcaaaagctagaagctgaccggttccag
cttgggactgagatcaccacaactggtgacaattcatggcctatgcctgtgaacctcaag
cggcttatttggaatgcccagaagacattcaagattgattttagaagaccttctgacatg
catccgatggaaattgtggaagcgatagataaactgcaagaaagactcaaggttgtacct
ggtgatgatgctatgagcattgaggctcagaagaatgcaaccttgtttttcaatatcctg
ctccgtagcacatttgctagcaagagggtcttgaaggaatacaggcttacaaaggaagct
tttgaatgggttattggtgagattgaatcaaggttccttcagtcattggtggcccctggt
gaaatgattggatgtgtggctgcacagtccattggagaaccagcgactcagatgaccctg
aataccttccattatgctggtgtcagtgccaagaatgtcactcttggagttcccaggttg
agagagatcattaatgttgccaagaagataaagactccatctttgtctgtttacctgaag
cctgaggtgaacaagaagaaagaattggctaagaatgttcagtgtgctctggagtacacc
acactgcgcagtgtaacccatgccactgagatatggtatgaccctgatcctctaggaact
attattgaagaggatgtggagtttgtccggtcatattatgaaatgcctgatgaggatatc
gacccggataagatttctccttggctgctgcgtattgagcttaatcgtgagatgatgatt
gataagaagttgagcatggctgatattgcagagaagataaaccgtgaatttgatgatgac
ctatcgtgcatatttaatgatgataatgcagataagctcatcctccgtatccgcatcaca
aatgatgatgctccaaaaggagaaatacaagatgaatctgctgaggatgatgtcttcctc
aagaagatagagggcaacatgttgacagagatggcgcttcgaggcattccagatatcaac
aaagtgttcatcaaacatgggaaggtcaataaatttgaccaaagtgaaggcttcaaagca
gataatgagtggatgcttgatacggaaggtgtgaatctcttggctgtcatgtgtcatgag
gatgttgatgctacaaggacaacaagtaaccatctgattgaagtgattgaggttcttgga
atcgaggctgtccgtcgatctctcttggatgagcttcgggtggtcatatcttttgatgga
tcctatgtgaactacaggcatctggccattctttgcgatacaatgacatacagaggtcac
ctgatggctattacaaggcacggcatcaatcgaaatgatactggacctcttatgagatgc
tcctttgaagagactgtcgacatcttgcttgatgctgctgtatatgctgaagctgacctc
ctgagaggtgtcactgagaacattatgcttggacagcttgctcctattggtactggaggc
tgtgcgctatatctgaacgaccagatgttgcagcaggcgattgaacttcaactcccaagc
tatgtggaaggtctggactttggcatgacaccagcacgttcacccatctctgggacaccc
tatcatgaaggaatgatgtcgccaagttatctgcttagtccgaacatcagggcttccccc
attaacacagatgcttcattctcaccatatgttgggcacatggcgttctcaccattcccg
tcaccaggtggctactctccatcatcggggggatacagtccatcatcgccagttttcacc
ccagaaaaaggatatagccccctttctccatcatacagccctgcttcaccaagctatagt
cccacctcaccatcatatacacctggctctcccacttacagtcctacaagcccgaattat
tccccaaccagtccaacttactcgcccaccagtccatcatactcgcccacatctccaagt
tacagcccaacatctcctagctacagtcctacatcaccaagctacagccctacatctcct
agctatagtcctacatcaccaagctacagccccacctcgccggtttatagtccaacctcg
ccggcatatagccctacctctcctgcatacagccccacatccccctcttatagcccaaca
tccccgtcttacagccctacgtcgccttcatacagccctacatctccttcatacagccct
acatccccatcatacagtcctacctccccctcgtacagcccaacatcacctgcatacagc
cctacctcgcctggatacagcccaacatcaccaagttacagcccgacatctccaagctac
agtcctacttctccgagctacaatccttcatcagccaaatacagcccttcgcatgcttac
tctccaagcagtccaaggatgactccatacagtcagacctctccgaactacagtccaact
tcaccgacttactctcctacatcaccatcatattcacaaccaagtccatcatacagtcca
acgagcccattcaacacttctgggggacctagcccagattacagcccaacctctccaaat
tacagcccaactggaagctactcccccactgcacctgggtactccccatcatccacgggg
caagctactaatgacaaggacgacgagagcgctcgttga
DBGET
integrated database retrieval system
