Setaria viridis (green foxtail): 117863947
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Entry
117863947 CDS
T07951
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117863947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117863947
Enzymes [BR:
svs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117863947
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
117863947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Flu_M2
Motif
Other DBs
NCBI-GeneID:
117863947
NCBI-ProteinID:
XP_034603771
LinkDB
All DBs
Position
7:22714785..22727959
Genome browser
AA seq
1397 aa
AA seq
DB search
MAKPEEKLRCTKEPFIEDVGARRIKSIRFSVLSGSEIRKSAEVQVWNSRIYEHDMKPVPN
GLLDMRMGLASKKDTELKCSTCHGPFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICK
GCSRVLLAEKDRREFLKKMRNPRADALQKSAIMKKVRDKCKLTCCPRCEYKNGVVKKGRV
GLIVIHDCSKILDGHTEELKNALQHKKEKVSTSSVRMLDPATALSLFRRMVDEDCELLNL
GDRPEKLIVTEIAVPPVPIRPSVVVGNTRTSNEDSITAILKSIVNTNSILKETLQTGGLF
SKCFDCWQQLQLQVVEFVNSDAPCLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTV
ISPDPNLRITEVAIPVLMARVLTYPERVSNYNLEKLRQCIRNGPYKHPGANFIITPDGTK
LSLKYGDRRIHARDLKCGYTVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFN
ESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSS
FLVTRKDAFYDRSSFALLCSYVGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNARTK
VFLNLAVKEKIYSKKKEKKEGEEEEKETMCGRETMCPNDGYVYFRNSELLSGQVGKATLG
NGNKDGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKK
IDGGYKQCHDLISLFAKGALALHPGCNAAQTLEHKITGVLNEIRTAAGNVCMDTLHWRNS
PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPINSKTPAAKGFVAN
SFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGG
IVQFLYGDDGMDPAKMEGKDGTPLNLDQLFMKVTATCPHRGLDTLSPDDIKQMLEDKLTQ
HKTSSDGGCSEEFKECLKKFLEERIQLLKCTRKALHLDEKHVGKNDSCIEEIIAANISGI
SAKQLQVFLDTCFCRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG
VPRIKEIINAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEVASAIKIVLKSSQP
NLVVKLDMQLIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKSKL
QLELHNLKAMLPKVIVKGIPTVERVVIDERKKEGKLEKYNLLVEGTNLLAVMGTPGVDAR
NTKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTYKGEVLGIT
RYGIAKMKTSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGTGILKVRQ
RLDHLPELKYQPDPILS
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccggaggagaagctgcgctgcacgaaggagcccttcatcgaggatgtcggc
gcccggaggataaagagcatccggttcagtgtgctctcgggcagcgagattcgcaagtcc
gcggaggtgcaggtctggaacagccggatctatgagcacgacatgaagccggtgcccaat
gggttgcttgacatgcgaatgggacttgctagcaagaaagacacggaactcaaatgcagc
acctgccatggtccatttgctgaatgtcctggtcatttcggttacctgaagctcgcactt
ccagtttttaatgttggctttttcaattgtattctggacgtgttgaagtgtatctgcaag
ggctgtagcagggttcttcttgcagagaaagaccgcagagagtttctgaagaagatgaga
aatcccagagccgatgcgctacagaaaagtgctatcatgaaaaaagtgagggacaaatgc
aaactaacctgctgcccccggtgtgaatacaaaaacggtgtagttaaaaaaggcagagta
ggcctgatagtgattcatgattgcagcaaaattttggacggacatacagaagaactgaag
aatgcattacaacacaagaaagaaaaagtgtccactagttcagttcgcatgttagaccct
gcaactgctctctctctattcagaagaatggtcgacgaggattgtgaattgctaaacctt
ggtgataggccagagaaacttattgtgacggagattgcagtgccacctgtacctataagg
ccttctgttgttgttggtaatactagaacaagtaatgaagatagcattactgctatattg
aagagcattgttaatacaaattccatccttaaggagacccttcaaactgggggtctgttc
tccaagtgctttgattgctggcaacaacttcaacttcaagttgttgaatttgtaaatagt
gatgccccctgtcttcccgagtcacaacatcgtggccttgttcaacgactcaaagggaag
acaggccgatttcgtggtaacttgtctggaaaacgtactgagtacactggaaggactgtc
atatctcctgatccaaatttgagaataacagaggtggctattcctgtgttgatggctcga
gtcttgacttatcctgaaagggtttcaaactataaccttgagaagctgcgtcagtgtata
cggaatggaccatataaacatccaggggctaattttattataacccctgatggcacaaag
ctgagcttaaaatatggtgatagaaggattcatgcgcgggatttaaagtgtggctataca
gttgaaaggcatttagaagatggtgatgttgtcctgttcaatagacagccgagtttgcat
agaatgtcgattatgtctcacagggcaaggataatgccatggagaacactgagatttaat
gagtctgtttgcaacccgtataatgctgattttgatggcgatgaaatgaatttgcatgtc
cctcagacagaggaagctcgcactgaagcacttatgctcatgggggttcagaataattta
tgtactcctaagaatggggagatactggttgcttccacacaagatttcttgacttcatct
tttcttgttacaagaaaagatgctttctacgatagatcttcctttgctcttttgtgctca
tacgttggtgacgcaatggagaacattgatttgccaacaccagccttgattaaacctatt
gagctttggactggtaaacaattattcagtgtgttagttcgacctaatgcacgtacaaag
gtgtttctgaatcttgccgttaaagaaaaaatttattcgaagaaaaaggaaaaaaaagag
ggggaagaggaggaaaaggaaacaatgtgtggaagggaaacaatgtgtcccaatgatggt
tatgtctacttccgaaatagcgaactgttgtctggacaagttgggaaggccactttaggt
aatgggaataaggatggcatttactctgttcttctaagagattataattctcatgctgca
gcaagttgcatgaatcgcttggcaaaatttagtgcaagatttattgggaatcatggtttt
tccattggtgtggatgatgtccaaccaggagaacatctaaatcggcaaaagaaaaagaaa
atagatggggggtacaaacaatgccacgatcttatttctttgtttgccaaaggtgcactc
gcgttgcatcctggttgcaacgcagctcaaacgttggagcataagataactggtgtgtta
aatgaaatcagaacggctgctggaaacgtgtgcatggatacacttcactggaggaacagc
ccattgattatgtctcagtgtggatctaaaggttctccaatcaatatcagtcagatggtt
gcttgtgttggccagcaatctgtcggagggcgtcgtgccccagatggttttatagataga
actcttccccactttcctataaattcaaagacccctgcggctaaaggttttgttgctaat
tcgttctatactggtttgactgctactgagtttttcttccacacaatgggtggtcgagaa
ggtcttgttgacacagcggtgaaaacagcagaaactggatatatgtcccgcagattgatg
aagggtttagaagatctctctgttttctatgatcagacagtccgtaatgctagcggtggt
atagttcagtttttgtatggagatgatggcatggatcctgcaaagatggaaggaaaagat
ggcacacccttaaatttggatcagttgtttatgaaagtcacggccacatgtcctcatagg
gggctggatacattatctcctgatgatatcaagcagatgttagaggataagctcacacaa
cataaaacctcatccgatggtggttgtagtgaagagttcaaggaatgcttgaaaaaattt
cttgaggaacgtatacaattactaaagtgcacaagaaaggcacttcatctagatgagaaa
catgtaggaaagaatgattcttgcatagaagaaatcattgctgctaatatttctggtata
tctgcaaaacaactacaggttttcttggatacctgtttttgtcgttataactcaaaggca
attgaagccggagcatctattggagcaattggagctcaaagtattggagagccagggact
cagatgacactgaaaacatttcactttgcaggagtagctagcatgaatgttactcttggt
gttcctcgcatcaaggaaattatcaatgctgctaaaaagataagcacacctattatcacc
actgagcttctgtctaggaaagatgtgctgtctgcacgcattgtgaaaggagctatggag
aaagcagtgctcggtgaggtagcatcagccataaagattgtcttgaaatcaagtcagcca
aacttggtggtcaaacttgatatgcaacttatagaagctctgcacatggggatatctgct
gactctgtgcagctgtcaattttgaatcatcccaagatcaagttaaaatctgagcatgtc
cgtgtcatcgatagagccaagttgagaatatatccagctggaacggataagtccaaactt
cagcttgagctgcataacctcaaagccatgcttccgaaagtgattgtgaagggcattcca
actgttgaaagagttgttattgacgaaagaaaaaaagaaggaaaactagaaaaatacaac
ttgttggttgaaggaacaaacctcctggccgttatgggtacccctggagttgatgctagg
aatacaaaaagtaatcacatcatggaaatgaacagcacacttggaattgaagctgctagg
agatctattatcgatgaaattcagtacacaatgaaaagtcatggcatgaacattgatgtc
agacatatgatgcttctggcagatttgatgacatacaagggtgaagttcttggcattact
agatatggcattgcaaagatgaaaaccagtgtgctgatgcttgcttcatttgagaaaacc
tcggaacatctattcaatgcctcatacagtggccgtgaggacgagatagagggagtcagc
gaatgcattatcatgggcattcccatgcaactcggtaccggtattctcaaagtcaggcaa
aggctcgaccatctccctgaattgaagtaccagccggacccgatattgtcgtga
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