Setaria viridis (green foxtail): 117865476
Help
Entry
117865476 CDS
T07951
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svs03016
]
117865476
Enzymes [BR:
svs01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
117865476
Transfer RNA biogenesis [BR:
svs03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
117865476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
TRAM
Motif
Other DBs
NCBI-GeneID:
117865476
NCBI-ProteinID:
XP_034605579
LinkDB
All DBs
Position
7:complement(19497903..19501597)
Genome browser
AA seq
624 aa
AA seq
DB search
MEDIEDVLGPAGLSGGGAPPGLRLPLSTVAVKPKRRSSRVAQTPPQPEARIPGTQTIYVK
TFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKNA
KKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLLSRKTLPSLDL
PKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKIVVSEGVREIWLS
SEDTGAYGRDIGTNLPNLLNAIVAELPADRSTMLRIGMTNPPFILEHLKEIAAILCHPCV
YSFLHVPVQSGSDAVLTGMNREYTVGEFRKVVDTLCELVPGMQIATDIICGFPGETDEDF
AETVNLVKDYQFPQVHISQFYPRPGTPAARMKKVPSNDVKKRSRELTSVFESFSPYQGME
GKVERIWVTMIATDGVHLVGHTKGYIQVLVIAPDSMLGTSAVVRITSVGRWSVFGEVIEG
SVVVGEAPKQISIVPQKEHRQNQVEEADCCGADSCGTCACSDVVQNCGPEQCKNTPDAHQ
TIDDVNRQEAIQSTLVRRNVEGSTKASESSAVTRSVGQEQQVNFVTRRGLNVDTILWCGL
ALSFAATVALLVLLTSKISSTSSN
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggaggacatcgaggacgtgctaggcccggccggcctctccggcggcggggcgcctccg
gggctccgcctccctctctccacggtcgcggtcaagcccaagcgccggtcgtccagggtc
gcgcagacaccgccccagcccgaggcccggattcctggcacgcagacgatatacgtcaag
acgttcgggtgctcacataaccagagtgacagtgaatacatgtcagggcagctctcggca
tttggatatgctattactgaagaacccgaaggagcagatttgtggctaattaacacatgc
acggtgaaaaatcctagtcaatctgcgatgaccacccttatatcaaaatgcaagaatgca
aaaaaaccattagtagtggctggatgtgtaccgcaaggaagccagggtctcaaggagctt
gaaggcattagtataattggagtgcaacagatagaccgggttgttgaagtggttgaggaa
accttaaaaggccatgaggttcggctgttgagtcggaaaacactgccctcacttgattta
cctaaggtaagaaagaacaagtttattgagattcttcctattaacgtggggtgtttaggc
gcctgcacatactgtaagacaaagcatgctcgtggtcatttgggaagctatactattgac
agcttggtggatcgtgtgaaaattgttgtctctgaaggtgtccgagagatatggttgagc
agtgaagatactggtgcttatggcagggatatcggtacaaatcttccaaatctgttgaac
gcaattgttgcagagcttcctgctgaccgaagcacaatgctccgcataggcatgacaaac
cctcctttcatactagagcatttgaaggagatagctgccattttgtgtcatccttgtgtt
tattctttcctccatgttcctgtgcaatctggaagcgatgctgttttaacgggaatgaat
cgtgaatacactgttggtgagtttaggaaggtagttgacactctctgtgagcttgtccct
ggaatgcaaattgcgacagatattatctgtggctttcctggtgagactgatgaagatttt
gccgagactgttaatcttgtaaaggactatcaattccctcaagtccacatatcacagttt
taccccagaccagggacacctgctgctaggatgaagaaagtgccaagcaatgatgtgaag
aagcggagtcgtgaactgacttctgttttcgaatcattttcaccctaccaaggaatggaa
ggcaaggtagagcgaatctgggtaaccatgatagctactgatggtgttcacttggtggga
cataccaagggatatatccaggtgctggtcattgccccagatagcatgctaggaacatca
gcggttgtgaggatcacatcagttggacgatggtctgtattcggcgaggtaatagaagga
tctgttgtagtaggagaagcacctaagcaaatcagcattgtaccgcagaaagaacacaga
cagaatcaggtggaggaagctgattgttgtggcgctgactcttgtggcacctgtgcatgc
tctgacgtggtacaaaactgcggccctgaacaatgtaagaatacgcccgatgcacaccag
accattgatgatgttaaccgtcaggaggcaatccagtctacgcttgtgaggagaaacgta
gaggggtcaacgaaagcaagtgaaagcagtgctgtaacacgatcggtaggacaggaacag
caagtgaactttgtaactaggagagggttaaatgttgacacgattctgtggtgcggcttg
gccctgagctttgctgcaacggtagccctgcttgttctccttaccagcaagatttcatcg
acatcctccaactag
DBGET
integrated database retrieval system
