Sphingobium sp. YBL2: TZ53_19970
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Entry
TZ53_19970 CDS
T03855
Name
(GenBank) 3-hydroxyacyl-CoA dehydrogenase
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb00071
Fatty acid degradation
syb00280
Valine, leucine and isoleucine degradation
syb00310
Lysine degradation
syb00362
Benzoate degradation
syb00380
Tryptophan metabolism
syb00410
beta-Alanine metabolism
syb00640
Propanoate metabolism
syb00650
Butanoate metabolism
syb00907
Pinene, camphor and geraniol degradation
syb00930
Caprolactam degradation
syb01100
Metabolic pathways
syb01110
Biosynthesis of secondary metabolites
syb01120
Microbial metabolism in diverse environments
syb01200
Carbon metabolism
syb01212
Fatty acid metabolism
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
TZ53_19970
00650 Butanoate metabolism
TZ53_19970
09103 Lipid metabolism
00071 Fatty acid degradation
TZ53_19970
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
TZ53_19970
00310 Lysine degradation
TZ53_19970
00380 Tryptophan metabolism
TZ53_19970
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
TZ53_19970
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
TZ53_19970
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
TZ53_19970
00930 Caprolactam degradation
TZ53_19970
Enzymes [BR:
syb01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
TZ53_19970
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
TZ53_19970
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
TZ53_19970
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Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
NAD_Gly3P_dh_N
F420_oxidored
DAO
Pyr_redox_2
2-Hacid_dh_C
UDPG_MGDP_dh_N
NAD_binding_8
Sacchrp_dh_NADP
XdhC_C
LSDAT_euk
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AJR25677
UniProt:
A0A0C5XSQ1
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Position
4345079..4347256
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AA seq
725 aa
AA seq
DB search
MQTINFDIDADGIATLTIDVPDQSMNVIGPDFLADLDAAITRISSEEAIKGAVIASGKSS
GFMAGMDLKYFGSMLVSENGKRPSPAAIFDKVFVLNQLFRRLETCGKPVACAIEGTCVGG
GFELALACHRRIVGDSPKTQLGLPEILIGLFPGGGGSQRLPRIMGVQASLMYMLQGKLFR
PADAAMMKVVDQVVPQGTAVEAAREWVKANPNAFVQPWDVKGFKFPGGAGGFNPAFVQTM
AGALPMTLKQTQRNMNAPIALLSAVYEGAFLPIDRAIRVESKYFAKVAADPQAANMIRSL
FVNKQAAERGARRPKDQPKAPTKKLAMLGAGMMGAGIATVAAQAGIEVVLFDRDQAYAEK
GKAHVEEVLKKRLGRGMTPEKMAETLARVTPTTDYAALAGADFVIEAVFEDVAIKAEVTK
KVEEVLGADTIFGSNTSTLPITKLAKAWSKPENFIGIHFFSPVEKMPLVEIILGKETGPA
AIAKALDFVAQIRKTPIVVNDSRGFYTSRCFGTYVQEGVEMVAEGINPALIENAGRQLGM
PVGPLAVGDEVSIELGHKIVVAAQKELGDAYVAQPSDAVMARMVELGRLGRKSAKGWYDY
PEGGKKHLWAGLEEMFPRAAVQPDVEEVKERLLYRQLIECARCFEEGVLETPEDGDIGAI
FGWGFAPYTGGPFSHMDTVGIGHVVAVLERLAATHGDRFAPTVQLQDMAASGATFYRPVS
SRAAA
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccatcaatttcgacatcgacgccgacggcatcgccaccctcaccattgatgtt
cccgatcagtcgatgaacgtcatcggcccggatttcctggccgatctggacgcggcgatc
acgcgcatttcctccgaggaggcgatcaagggcgcggtcatcgcgtcgggcaagagcagc
ggcttcatggcgggcatggacctcaaatatttcgggtcgatgctggtcagcgagaatggg
aaacgcccctcccccgccgcgatcttcgacaaggttttcgtgctgaaccagttgttccgg
cggctggagacctgcggcaagccggtcgcctgcgccatcgagggcacctgcgtcggcggc
gggttcgaactggcgctggcctgtcatcgccggatcgtcggggacagcccgaagacgcag
ttgggcctgcccgaaatcctgatcggcctgttccccggcggcggcgggtcgcagcgcctg
ccgcgcatcatgggggtgcaggcgtcgctgatgtatatgttgcagggcaagctgttccgt
cccgccgacgcggcgatgatgaaggtggtcgatcaggtcgtgccgcagggcacggcggtc
gaagccgcgcgcgaatgggtgaaggccaatcccaacgccttcgtgcagccctgggacgtc
aagggcttcaaattccccggcggcgcgggcggcttcaatccggccttcgtccagaccatg
gcgggcgccctgccgatgacgctcaagcagacccagcgcaacatgaacgcgccgatcgcg
ctgctttcggcggtctatgagggggctttcctgcccatcgaccgggcgatccgggtggag
agcaaatatttcgccaaggtcgcggccgacccgcaggcggcgaacatgatccgcagcctg
ttcgtcaacaagcaggcggccgagcgcggcgcaaggcggcccaaggaccagcccaaggcg
ccgacgaagaagctggccatgctgggcgcgggcatgatgggcgcagggatagccaccgtg
gccgcgcaggcggggatcgaggtggtgctgttcgaccgcgatcaggcctatgccgaaaag
ggcaaggcgcatgtcgaggaggtgctgaagaagcggctgggccggggcatgacgccggag
aagatggcggagacgctggcccgcgtgacgccgacgacggattatgccgcgctggccgga
gcggacttcgtgatcgaggcggtgttcgaggatgtcgcgatcaaggccgaagtgaccaag
aaggtcgaggaggtgctgggcgcggatacgatcttcgggtcgaacacctccactttgccg
atcaccaagctggcgaaggcgtggagcaagccggagaatttcatcggcatccacttcttc
tcgccggtcgagaagatgccgctggtggagatcatcctgggcaaggaaaccgggccggcc
gccatcgccaaggcgctggatttcgtggcccagatcaggaagacgccgatcgtcgtcaat
gactcgcgcggcttctatacctcgcgctgcttcggcacctatgtgcaggagggcgtggag
atggtcgcggaggggatcaatcccgcgctgatcgaaaatgccgggcggcaactgggcatg
ccggtggggccgctggcggtgggcgacgaggtttccatcgagctgggccacaagatcgtc
gtcgccgcgcagaaggagctgggcgacgcctatgtcgcgcagccgtccgacgcggtgatg
gcgcggatggtcgaactggggcggctggggcggaaaagcgccaagggctggtatgactat
cccgagggcgggaagaagcatctctgggccggtctggaggagatgttcccgcgcgccgcc
gtgcagcccgatgtcgaggaagtgaaggagcggctgctctaccgccagttgatcgaatgc
gcgcgctgcttcgaggaaggcgtgctggagacgccggaggatggcgacatcggggcgata
ttcggctggggcttcgcgccctataccggcggaccgttcagccatatggacacggtcggc
atcggccatgtcgtcgcggtgctggagcggctggcggcgacgcatggcgatcgcttcgcg
cccacggtccagttgcaggacatggcggcaagcggcgcgactttctatcgccccgtttcg
tcccgcgccgcggcatga
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