Trichosporon asahii var. asahii: A1Q1_05094
Help
Entry
A1Q1_05094 CDS
T06566
Name
(RefSeq) DNA-directed RNA polymerase ii largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tasa
Trichosporon asahii var. asahii
Pathway
tasa03020
RNA polymerase
tasa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tasa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A1Q1_05094
09124 Replication and repair
03420 Nucleotide excision repair
A1Q1_05094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tasa03021
]
A1Q1_05094
03400 DNA repair and recombination proteins [BR:
tasa03400
]
A1Q1_05094
Enzymes [BR:
tasa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A1Q1_05094
Transcription machinery [BR:
tasa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
A1Q1_05094
DNA repair and recombination proteins [BR:
tasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
A1Q1_05094
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
AcetDehyd-dimer
Motif
Other DBs
NCBI-GeneID:
25988606
NCBI-ProteinID:
XP_014177376
UniProt:
J4U7H4
LinkDB
All DBs
Position
Unknown
AA seq
1787 aa
AA seq
DB search
MTVTFPYSSAPVKRIKEIQFGVMSPEEIIEHPEVMDENGKQKVGGLMDPKMGTIDRNFKC
QTCSEGMAECPGHFGHIELARPVFHAGFIVKVKKILECVCYSCGKLKVDMRDPMVQNIVR
RIKPQHRLKAIWDLAKAKNVCEADSLEENDAEQDEYGENSGPKPKTGHGGCGHHQPAYRK
EGLKLIAVFKPSKDKQEEGSEPERRNISAAECHNILKKIPDEDLLIMGLNAEYARPDWMI
LTVLPVPPAAVRPSISVDGGAMRSEDDLTYKLGEILKASAQVRKLEAEGVPPSVVNEHFD
LLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVIT
GDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQQLINNGPATYPGARYYVKDTGERID
LKYRKSGEPIPLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKVMNYSTFRLNLSV
TSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGVRKF
TLRDNFCDWAFVQNLLLWLPDWDGTIPPPAILKPRPMWTGKQLVSMCIPKGINIAAHDNE
RPSPIDVTDQNVLVDNGELVYGTITKSMAGAASNGLIHVIFRELGHIKARDFFSAMQRVI
NFWLLHNGFSVGIGDTIADSATMAAVNNRLVEAKDTVQAFISEAENNKMKPRPGMTIRET
LEAAVSGELNKARDWAGKTAQDNLKADNNVKQMVVSGAKGSFINISQMSGCVGQQIVEGK
RIPFGFRHRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE
TGYIQRRLVKAMEDLKVGYDGTVRNSGGDIIQFLYGEDGMDGAMMEKQTLDTLRLSDAAF
ESKYRVDVLGATGGFKKGTLEAGIDQTSVDLQKLLDEEWGQLVEDRRLLREEIFPDGDPG
HPLPVNIKRIIQNSQQIFHIDKRLPSDLDPAYLIEKRQALSDSLVVVRGDDPISRESQRN
ATLLFNILLRSQLATRRVLEDYHLSRVAFDWVCGEIETLFNRAIVAAAEMVGTLAAQSIG
EPATQMTLNTFHYAGVSSKSVTGGVPRLKEIINVATNIRTPATNVYLDPEYSRTERDAHQ
ISRKLTYTRLRDVTASVEIFYDPKLDSTDIEEDKEFVDAFFAIPDEDIRLELHSPWLLRL
ELDRAKVLEGGYEMADIVSAIVSTVGKDMFVIHSEDNADKLIIRIRVVAEEKMDGEELLG
DEDMFLKRIELTLLDGVELGGIPGITRVFISEGKQTVLSQKGEYDQQQEWFLETDGINLQ
QVMAVDGVDFTRAYSNNCYEVWQILGIEAGRNALYKELHGVIASGGSYVNYRHMALLCDL
MCNKGHLMSITRHGINRTDAGALSRCSFEETVEILLEAAAVGDVDDCQGVAENVLLGQMA
PMGTGAFDVSLDLGMLKDVIVDHRLPVQIALAQKGAGGMTPGGAMTPYDNMSPMWNGGGM
GGVASASFSPMQTSNNDEGGYGAMPYGMSPMQGGQSPYAPGGAGFSPTSPFATATSPYQP
TSPAWGGAGGMSPWVPRNQGYGATSPSYSPTSPQYNPTSPRYSPTSPSYSPTSPAYSPAS
PAYGGGRTSPGYSPTSPAYSPTSPMGATSPRYSPTSPQYSPASPAFSPTSPAYSPTSPQA
FQATSPKYSPTSPAFSPTSPSYSPTSPVYSPTSPSYSPASPAYSPTSPVYSPTSPGGPGQ
QGQNGAAQSRGWGTAGQSRYSSDPSWSKNKNDRGIGERQEGKHREIR
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaccttcccttattcgtccgcgccggtgaagcggatcaaggagatccagttc
ggtgtcatgagtccagaggagatcattgagcacccggaggtcatggacgagaacggcaaa
cagaaggtcggcggtctgatggaccctaagatgggaactatcgaccgtaacttcaagtgt
cagacgtgttcagaaggaatggccgaatgccccggccattttggtcacatcgagcttgcg
cgacccgttttccatgccggattcatcgtcaaggtgaagaagatcctggaatgcgtttgc
tactcgtgcggcaagctcaaggtcgacatgcgcgaccccatggtccagaacatcgtccgt
cgcatcaagcctcagcaccgtctcaaggcaatctgggaccttgcgaaggcgaagaatgtg
tgcgaagccgactctttggaggagaacgatgcggaacaggacgagtacggagagaacagc
ggccccaagcccaagactggacatggaggatgcggtcaccaccagcccgcttaccgaaaa
gagggcctgaagttgatcgctgtcttcaagccctccaaggacaagcaggaggagggatcg
gagccggagcgcagaaacatctctgctgctgagtgccacaacatcctgaagaagatccct
gatgaggatcttctcattatgggtctcaacgccgagtatgcgcgccccgactggatgatc
ctcaccgttcttcctgtgcctcctgccgctgtccgcccgtccatttctgttgacggtggt
gctatgcgctctgaggatgacttgacgtacaagcttggtgaaatccttaaggccagcgcc
caggttcgtaaactcgaggcagagggtgttccgccatcggtagtgaacgagcacttcgac
ctcctccagttccacgtcgcgacctatatggacaacgatatcgccggtatcccccaggct
ctgcaaaagtccggccgcccggtgaaggccatccgtgctcgtctgaagggcaaggagggt
cgtctgcgtggtaacctcatgggcaagcgtgtcgacttctccgcccgtaccgtcattacg
ggagatccaaaccttcagctcgaccaggtcggtgtgccgcgcagtatcgccatgactttg
acgtacccggagcgagtgacgccttacaacatcaactatctccagcagctcatcaacaac
ggtccagccacttaccctggtgctcgttactatgtgaaggataccggagagagaatagac
ttgaagtaccgcaagtctggagagccgattcctctgcagttcggctggatcgtcgagaga
catctgaaggatggcgactacgttcttttcaaccgtcagccgtctctccacaagatgtct
atgatgagtcaccgtgtcaaggtgatgaactactcgaccttccgtctcaacctctcggtc
acgtcaccgtacaacgccgacttcgacggagacgagatgaacttgcacgtcccgcagagt
gaggagacgagggcagagctgtcccagatcgcttgggttccccgacagattatctccccg
caagccaacaagcccgtcatgggcattgtccaggacacgctctgtggtgttcgaaagttc
acccttcgagacaacttctgcgactgggcattcgtccagaacctgctgctgtggctgccg
gactgggatggaactatccccccacctgccattctgaagccccgaccaatgtggacgggc
aagcagctggtttccatgtgtatccctaagggtatcaacattgcggctcacgacaacgag
cgcccgtcgcccatcgatgtgaccgaccagaacgttctcgttgacaatggagagttggtc
tatggaacgatcaccaagagcatggctggtgccgcgtccaacggtctcatccacgtcatc
ttccgagagcttggtcacatcaaagctcgcgacttcttctcggccatgcagcgagtcatc
aacttctggctcctccacaacggtttcagtgttggtatcggagacacgattgcagacagc
gcgacgatggctgccgtcaacaaccgtcttgtggaggccaaggacacggttcaggcgttc
atcagcgaggctgagaacaacaagatgaagccccgaccgggtatgacgatccgtgaaact
ctggaggcggcggtgtccggtgaactcaacaaggcgcgtgactgggctggtaaaacggca
caggacaacctaaaggcggacaacaacgtcaagcagatggttgtctccggtgccaagggt
tcgttcatcaacatctctcagatgtcgggatgtgtcggtcagcagatcgtcgagggtaaa
cgtattccgttcggtttccgacaccgcacactcccccacttctcgaaggatgactacgga
ccggaatctcgtggtttcgtcgagaactcgtacctccgtggtctgacccctcaagagttc
ttcttccacgccatgggtggacgtgagggtctcattgacactgcggtcaagactgccgag
acgggttacatccagcgtcgacttgtcaaggccatggaggacctcaaggtcggctatgac
ggaaccgtgcgcaactcgggtggtgatatcatccagttcctctacggtgaggacggcatg
gatggagccatgatggagaagcagactctcgacactctccgcttgtcggacgcggctttc
gagtcgaagtacagggtggatgtcctcggcgctacgggaggcttcaagaagggaactctg
gaggctggtatcgaccaaacatcggtcgatctgcaaaagctgctggacgaggagtggggt
cagttggttgaggaccgaaggttacttcgagaggagatcttcccggacggtgacccagga
caccctctgccggtgaacatcaagcgtatcatccagaactcgcagcaaatcttccacatc
gacaagcgtctgccgagtgacctcgaccctgcctacctcatcgagaagaggcaagctctc
tccgactcgctggttgtggtccgtggcgacgatccgatctctcgggagagccagcgcaat
gctacgctgctcttcaacattcttctccggtcccaactggcgactcgccgagttcttgag
gactaccaccttagcagggtggcgttcgattgggtttgcggagaaatcgagacgctgttc
aacagggccatcgtggccgcggccgagatggtgggaacgcttgccgcgcagtctattggt
gaacccgctacccagatgacgctcaacaccttccattacgctggtgtgtccagtaagagt
gtcaccggaggtgtgccgcgtctgaaggagatcatcaacgtcgcgaccaacatccgtacg
ccggctaccaacgtctacctcgacccagagtacagcaggacggagcgcgatgcccatcag
atctcgcgtaagctgacgtacacgcgtctgcgagacgtgactgcttccgtggagatcttc
tacgacccgaagctcgactcgacggatatcgaggaggacaaggagttcgtcgacgcattc
ttcgccatccccgacgaagacattcgtctcgagcttcactcgccgtggctgctgcgtctg
gagcttgaccgtgccaaggttcttgagggtggatatgagatggccgacatcgtcagtgct
atcgtcagcaccgtcggaaaggacatgttcgtcatccactctgaagacaacgccgacaag
ctcatcattcgtatccgtgtcgtggcggaggagaagatggacggcgaggagctcctgggc
gacgaggacatgttcctcaagcgaattgagctgacgctgctggatggagttgagcttggt
ggaatccctggtatcacccgtgtgttcatctctgaaggcaagcagaccgttctttcgcag
aagggagagtatgaccagcagcaggagtggttcctcgagaccgacggtatcaacctgcag
caggtcatggccgtcgacggtgtcgacttcacgcgtgcctactcgaacaactgttacgag
gtctggcagattctcggtatcgaggctggccgcaacgccctgtataaggagttgcacgga
gtcattgcttctggtggttcttacgtcaactaccgtcatatggcgcttctctgtgacctc
atgtgcaacaagggtcacctcatgtcgattacccgtcacggtatcaaccgaaccgatgct
ggtgcgctgtccaggtgttcgttcgaagagactgtcgagattcttctcgaggccgctgcc
gtcggtgatgtcgacgactgccagggtgtcgctgagaacgttcttctcggccagatggcc
cctatgggtaccggcgcgttcgacgtctcgctcgacctcggcatgctcaaggacgtcatc
gttgaccaccgtctgccggtgcagatcgctcttgcccagaagggtgctggcggcatgacg
cctggtggtgccatgacgccttacgacaacatgtcgcccatgtggaacggtggtggcatg
ggtggtgttgcgtctgcctcgttctcgccgatgcagaccagcaacaacgacgagggtggc
tacggtgccatgccctacggcatgtctcccatgcagggcggacagtcaccgtacgctccc
ggcggtgctggcttctcgccgacgtctccgttcgccacggccaccagcccgtaccagccg
acctcgcctgcctggggcggagcgggcggcatgtcgccttgggttccgcggaaccagggc
tacggtgcgacgtcgccgtcgtactccccgacgtcgccgcaatacaacccgacgagcccg
aggtactccccgacgtcgccgtcgtactctccgacgtctccggcgtactctcccgcttcg
cccgcttacggtggcggccgcacatcgcctggctacagcccgacgtctccggcgtactcg
cccacgtcgccgatgggcgcgacctcgccgcggtactcgcccacttctccgcagtactcg
cctgcctcgcctgcgttctcgccgacgtcgcctgcctactcccccacctccccgcaggcg
ttccaggccacgtcgccgaagtactcgcccacgagccctgccttctcgcccacgagcccg
tcctactcccccacctcgcccgtgtacagtcccacgtcgccttcgtactcccccgcgtcg
cccgcgtactcgcccacctcgcccgtgtacagtcccacgagccccggcggtcctggccag
caaggacagaacggcgccgcccagtcgcgcggctggggtaccgccggccagagcaggtac
tcgagcgacccgagctggagcaagaacaagaatgatcgagggatcggcgagcgacaagag
ggcaagcaccgtgaaattagatag
DBGET
integrated database retrieval system
