Trematomus bernacchii (emerald rockcod): 117473449
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Entry
117473449 CDS
T09643
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2C-like
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04020
Calcium signaling pathway
tben04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117473449
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117473449
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117473449
Ion channels [BR:
tben04040
]
Ligand-gated channels
Glutamate (ionotropic)
117473449
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
NMDAR2_C
ANF_receptor
MatE
Motif
Other DBs
NCBI-GeneID:
117473449
NCBI-ProteinID:
XP_033974920
EnsemblRapid:
ENSTBNG00005010362
LinkDB
All DBs
Position
Unknown
AA seq
1395 aa
AA seq
DB search
MAIPRGQPPPSPWPPLFLLLLLYLLLISSPPPLQARPLLLQQSINVAVVFSGSSYQNEVR
GRLSGENFVDMPVVVSPVTVLVNDTNPRDLLTRLCDTMATEKLHGVVFEDDVGVGDDTQV
AEVAQILDFLSTQTALPIVGISGGSAVVIPFKAEGSSFLQMGASLEQQIVCMFKLMEEYD
WGEFAVITSLLPGYDTFVDIVQSYTDTSYFLWNLQDVLSLEMSVGSNDARTKRMLQQVDS
QVLMAYCSYEEAQYLFQQAAEVGLLGPGYIWIIPSQAVGNPDSPPPASFPIGVIGVITDQ
WRKSLRQRVREGVAIVAQGAESFKKLYGFIPEGQGDCTKLAKHSDNNTLFRHMLNVTWER
KDLSFNSQGFLTNPSMVLVALDRDRLWDKVGTFSRGILQVRYPVWPRYGSFLEQVSDDRH
LTVATLEEHPFVMVENVDPGTGTCVRNTVPCRRQSNQTGSEDTEMNDIGHAESYTKLCCK
GFCIDILKKLSRTIKFSYDLYLVTNGKHGKLVRGTWNGMIGEVFYRRADMAIGSLTINEE
RSEIIDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFE
YLSPVGYNRSLVSAKTPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFF
AVIFLASYTANLAAFMIQEQYIDTVSGLSDKKFQKPHEHYPPFRFGTVPNGSTERNIRSN
YPDMHMHMMKYNQKGVEEALESLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFA
TTGYGIALQKDSRWKRLIDLALLQFLGDGDTQRLETVWLSGICQNEKNEVMSSKLDIDNM
AGVFYMLLVAMGLSMLVFAWEHLLYWKLRHSLRKSRKLDYMLAISRGIYSCFKGVEEPGR
SSGLAKPDLTSNYAQQNMLKMLRTAKDLVSTANVETSLDHATKTIEHLSRHGGSLPVRIP
QVATETVPGGFAYITENHCPLTPPLTAVTSLKLQRGVTRPTPLRYTLPTRSSSCLYDRPL
PVSSLSSPHLAMGEPLPHQHPHHYQTTGRLYVDPHPHSPFIPYNDLQLPDIYASHPVSTH
QNQQVHAGFSRRKRRSKSFQCEDGNVEGRKHRDQEKSNISPVYLSELKANHLQENHISAP
SVDCIYSEEVKCPRVENYGSWPPEDMVLRGRRRHRRPSFLKATWGSEQMRQMEESLSSLS
SQSQSALPDLFPCMLPQTAPAKPYNPAQLRNNLCLPRNQAYLHIREDHRRPNGRKGQRLR
YSHSAHLPTYGEAVRHGSGLGRGMVRRATSLLSRQYAHYLNSYPGLPLYHGPLDLQHHSQ
ASSSPVCQLLTCGDGRCGSQRALLYQDSLYGAYGIYQGSQTGSEALAGQRAGGQPAGSPC
VLRPWRRVSSLESEV
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggccattcccaggggtcagcctcctccctctccttggcctcctctcttcctcctcctc
ctcctctacctcctcctcatctcctccccaccccccctgcaggcccggcccctcctcctc
cagcagtcaatcaacgtggcggtggtgttcagcggctccagctaccagaatgaggtcaga
ggtcgtctcagcggggagaactttgtggacatgcccgtggtggtcagcccagtgaccgtg
ctggtcaacgacaccaacccccgtgacctgctgactcgcctctgcgataccatggcaacg
gagaagctgcacggagtcgtgtttgaggatgatgtgggtgttggtgacgacactcaggtg
gcagaagtggcacagatcctggacttcctctccactcagacagctctgccaatcgttggc
atcagtggcggctctgcagttgtcataccattcaaggcggagggatcctcattcctgcag
atgggagcgtctcttgagcagcagatcgtctgcatgttcaagctcatggaggagtatgac
tggggcgagtttgcggtgatcaccagtttgctgccgggctacgacacctttgtggatata
gttcagtcctacacagatacctcctatttcctgtggaacctgcaggatgttttgtctctg
gaaatgtccgttgggtcaaatgatgcgaggacgaagcgcatgttgcagcaggtggattct
caggtcctgatggcgtattgctcctatgaggaggcacagtacttgtttcaacaggctgct
gaggtgggtctgctgggtccaggatacatctggatcatccccagtcaggccgtgggcaac
cctgatagccctccacctgccagcttccctattggtgttatcggtgtaattacggaccag
tggaggaagagcctgcggcagagggtgagggagggtgtcgccattgtagctcaaggggct
gagagcttcaagaagctgtacgggtttattcctgagggacaaggtgactgcaccaaactg
gctaaacactcagacaacaatactctgttcaggcacatgctgaatgtgacgtgggaaagg
aaagatctgtcattcaacagccaaggcttcctcaccaatccttccatggtcctcgtcgct
ttggaccgtgacagactttgggacaaggtcggaactttctcccgagggatccttcaggtt
cgctacccggtttggcctcgatacggcagctttctggagcaggtgtccgatgaccgccac
ctgactgtggccacgctggaggagcatcccttcgtcatggtggagaacgtggacccgggc
actggcacatgtgtccgcaacacagtgccctgcaggcgccagtccaatcaaacaggaagc
gaggacacagagatgaatgacatcggccacgcggagtcctacaccaaactgtgctgtaag
ggcttctgcatagatatcctgaagaaactgtcccgcaccatcaagttctcatatgacctc
tacttagtcaccaatggaaaacatggcaagctggtccgtggtacttggaacggcatgatt
ggggaggttttctacaggcgagctgacatggctattggctctctcactatcaacgaggag
cgttcggaaataatcgacttctccgtgccgtttgttgagacgggcattagtgtcatggta
gcccgcagcaatggcacagtttccccatctgcttttcttgagccctacagcccagcagtt
tgggtcatgatgtttgtgatgtgcctgaccgtcgtggctgtgacagtttttgtgtttgaa
tacttaagtccagtcggctacaaccgcagtctggtcagcgccaaaactcctggtggccca
acgttcaccatcgggaagtcagtgtggctgctgtggggtattgtctttaacaactcggtc
cccattgaaaacccgaaaggaacgaccagtaagatcatggtcctggtctgggccttcttt
gctgtcatcttcctggcttcctacactgccaacctggctgccttcatgatccaggagcaa
tatatcgacacagtgtctgggctttctgacaagaagttccagaaaccacatgagcattat
cctccttttcgctttgggacggtcccgaacgggagcacagagaggaacatccgcagcaac
taccccgacatgcacatgcacatgatgaaatacaaccagaagggggtggaagaagctcta
gaaagcctgaaaactgggaaactggacgctttcatctacgacgctgccgttttgaactac
atggccgggaaggacgagggctgcaagctggtgaccatcggcagcgggaaagtatttgcc
accacaggatacggcatcgctctgcagaaggactcccgctggaaacgtcttattgacctg
gctctgctgcagttccttggagacggagacacgcagcgcttggagacggtgtggttgtcg
ggcatctgtcagaacgagaagaacgaagtgatgagcagcaagctggacattgacaacatg
gcgggagtcttctacatgctgctcgtggccatgggcctcagcatgctggtctttgcctgg
gaacacttgctctactggaaactgagacactccctccgcaagtctcgcaaacttgactac
atgttggccatcagtaggggtatttatagttgtttcaagggagtagaggaacctgggcgt
tcatctggtttggccaaacctgacctaacctccaactacgctcaacaaaacatgcttaag
atgcttcgcactgccaaggacctggtctccactgccaatgttgagacgtctctggaccac
gccaccaagaccatagagcatttgagtcgtcatggcggcagcttgcctgttcgtattcca
caagtcgccacggagactgtaccaggaggatttgcctatattacggagaatcactgccca
ctaaccccacctttgaccgctgttacctctctgaaactccagaggggtgtgaccaggcca
acgccactacgctacacgctcccaactcgctcttcttcatgtctgtatgaccggccactt
cctgtgtccagcctcagtagcccccatctggctatgggtgaaccactccctcatcagcac
ccacaccactaccagaccacaggtagactctatgtagacccccatcctcactcacccttc
atcccctacaatgatctccaactacctgacatctacgcatctcacccggtctccacgcat
caaaaccagcaagtccatgcgggcttctccagacggaaaagaagatctaaaagtttccag
tgtgaggatgggaatgtagaggggagaaaacacagggaccaggaaaagagcaacataagc
cccgtctatctgagtgagctcaaagccaaccacctccaagaaaaccacatctccgccccc
agcgttgactgcatctactcagaggaggtgaagtgtccgcgggtagagaactacggctcc
tggcccccggaggacatggtgctcagaggtagacgaaggcaccgccgcccctcattcctt
aaagcaacgtggggcagcgagcagatgcgtcagatggaggaatccctgtcatccctgtcc
agccaatcgcagtctgccctgccggacctgttcccatgcatgcttcctcagaccgcacct
gcaaagccctacaaccctgcccaacttcgaaacaacctgtgcctcccacggaaccaggcc
tacctccacataagggaggaccataggaggcctaatgggcgtaagggccagaggctgcgc
tactcccactccgcccacctcccgacatacggagaggcagtgcgacatggcagtggttta
gggcgggggatggtacgcagagccaccagcttgcttagcagacaatatgcccactacctg
aactcataccctggactaccgctctaccacggccccctagaccttcagcaccacagccag
gcctccagcagcccagtgtgccagctgctgacttgtggtgatgggagatgtggaagccag
cgggctctgctgtaccaggacagtctatacggagcctatggcatctatcagggatcccag
actggatcagaggccctagcaggtcagcgagcagggggtcagcctgcggggagcccctgc
gtacttcgtccttggcggcgggtttccagtcttgagtctgaggtctaa
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